Comamonas denitrificans 123 is an obligate aerobe, mesophilic, Gram-negative prokaryote that was isolated from activated sludge in municipal wastewater treatment plants.
Gram-negative motile rod-shaped obligate aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Betaproteobacteria |
| Order Burkholderiales |
| Family Comamonadaceae |
| Genus Comamonas |
| Species Comamonas denitrificans |
| Full scientific name Comamonas denitrificans Gumaelius et al. 2001 |
| BacDive ID | Other strains from Comamonas denitrificans (6) | Type strain |
|---|---|---|
| 141721 | C. denitrificans CCUG 5180 A, LMG 7165 | |
| 150471 | C. denitrificans CCUG 41376 | |
| 151601 | C. denitrificans CCUG 44424 | |
| 151602 | C. denitrificans CCUG 44426 | |
| 151603 | C. denitrificans CCUG 44427, ATCC 700939 | |
| 151604 | C. denitrificans CCUG 44428, ATCC 700940 |
| @ref | Colony color | Medium used | |
|---|---|---|---|
| 23080 | yellow-white | nutrient agar plates |
| @ref | Production | Name | |
|---|---|---|---|
| 118894 | Pyocyanin |
| @ref: | 7219 |
| multimedia content: | DSM_17887..tiff |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_17887..tiff |
| caption: | DSM 17887 on medium 535 at 28 °C |
| intellectual property rights: | Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 7219 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 23080 | nutrient agar plate | ||||
| 23080 | nutrient agar plates | ||||
| 36677 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 118894 | CIP Medium 72 | Medium recipe at CIP | |||
| 118894 | CIP Medium 328 | Medium recipe at CIP |
| 118894 | Oxygen toleranceobligate aerobe |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 23080 | 17019 ChEBI | (R)-amygdalin | - | builds acid from | |
| 23080 | 28997 ChEBI | 2'-deoxyinosine | - | builds acid from | |
| 23080 | 28816 ChEBI | 2-deoxy-d-ribose | - | builds acid from | |
| 23080 | 28644 ChEBI | 2-oxopentanoate | + | carbon source | |
| 23080 | 16193 ChEBI | 3-hydroxybenzoate | + | carbon source | |
| 23080 | 37054 ChEBI | 3-hydroxybutyrate | + | carbon source | |
| 23080 | 32373 ChEBI | 4-coumarate | - | carbon source | |
| 23080 | 355715 ChEBI | 4-nitrophenyl beta-D-galactopyranoside | - | builds acid from | |
| 23080 | 17426 ChEBI | 5-dehydro-D-gluconate | - | builds acid from | |
| 23080 | 17426 ChEBI | 5-dehydro-D-gluconate | - | growth | |
| 23080 | 2179 ChEBI | 6-deoxy-d-galactose | - | builds acid from | |
| 23080 | 6-O-alpha-D-glucopyranosyl-D-gluconic acid | - | builds acid from | ||
| 23080 | 17128 ChEBI | adipate | - | builds acid from | |
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 23080 | 22605 ChEBI | arabinitol | - | builds acid from | |
| 23080 | 18305 ChEBI | arbutin | - | builds acid from | |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 23080 | 17057 ChEBI | cellobiose | - | builds acid from | |
| 23080 | 16947 ChEBI | citrate | + | carbon source | |
| 23080 | 16947 ChEBI | citrate | + | growth | |
| 118894 | 16947 ChEBI | citrate | - | carbon source | |
| 23080 | 16157 ChEBI | D-arabinonate | - | builds acid from | |
| 23080 | 17108 ChEBI | D-arabinose | - | builds acid from | |
| 23080 | 15824 ChEBI | D-fructose | - | builds acid from | |
| 23080 | 28847 ChEBI | D-fucose | - | builds acid from | |
| 23080 | 15895 ChEBI | D-galactonic acid lactone | - | builds acid from | |
| 23080 | 12936 ChEBI | D-galactose | - | builds acid from | |
| 23080 | 8391 ChEBI | D-gluconate | - | builds acid from | |
| 23080 | 8391 ChEBI | D-gluconate | - | growth | |
| 23080 | 17634 ChEBI | D-glucose | - | builds acid from | |
| 68369 | 17634 ChEBI | D-glucose | - | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 23080 | 18268 ChEBI | D-glucuronolactone | - | builds acid from | |
| 23080 | 62318 ChEBI | D-lyxose | - | builds acid from | |
| 23080 | 16899 ChEBI | D-mannitol | - | builds acid from | |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 23080 | 16024 ChEBI | D-mannose | - | builds acid from | |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 23080 | 16988 ChEBI | D-ribose | - | builds acid from | |
| 23080 | 33801 ChEBI | D-saccharate | + | carbon source | |
| 23080 | 17924 ChEBI | D-sorbitol | - | builds acid from | |
| 23080 | 16443 ChEBI | D-tagatose | - | builds acid from | |
| 23080 | 30927 ChEBI | D-tartrate | - | carbon source | |
| 23080 | 16551 ChEBI | D-trehalose | - | builds acid from | |
| 23080 | 65327 ChEBI | D-xylose | - | builds acid from | |
| 23080 | 27689 ChEBI | decanoate | - | builds acid from | |
| 23080 | 27689 ChEBI | decanoate | - | growth | |
| 68369 | 27689 ChEBI | decanoate | - | assimilation | from API 20NE |
| 23080 | DL-2-gamma-aminobutyrate | + | carbon source | ||
| 23080 | 17113 ChEBI | erythritol | - | builds acid from | |
| 23080 | 4853 ChEBI | esculin | - | carbon source | |
| 118894 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 23080 | 29806 ChEBI | fumarate | + | carbon source | |
| 23080 | 16813 ChEBI | galactitol | - | builds acid from | |
| 23080 | 24175 ChEBI | galacturonate | - | builds acid from | |
| 23080 | 5291 ChEBI | gelatin | - | builds acid from | |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 23080 | 28066 ChEBI | gentiobiose | - | builds acid from | |
| 23080 | 58044 ChEBI | gentisate | + | carbon source | |
| 68369 | 24265 ChEBI | gluconate | - | assimilation | from API 20NE |
| 23080 | 24297 ChEBI | glucuronate | + | carbon source | |
| 23080 | 17754 ChEBI | glycerol | - | builds acid from | |
| 23080 | 17754 ChEBI | glycerol | - | growth | |
| 23080 | 28087 ChEBI | glycogen | - | builds acid from | |
| 23080 | 29805 ChEBI | glycolate | + | carbon source | |
| 23080 | 29805 ChEBI | glycolate | + | growth | |
| 23080 | 606565 ChEBI | hippurate | + | carbon source | |
| 23080 | 17596 ChEBI | inosine | - | builds acid from | |
| 23080 | 15443 ChEBI | inulin | - | builds acid from | |
| 23080 | 16977 ChEBI | L-alanine | + | carbon source | |
| 23080 | 16977 ChEBI | L-alanine | + | growth | |
| 23080 | 30849 ChEBI | L-arabinose | - | builds acid from | |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 23080 | 18403 ChEBI | L-arabitol | - | builds acid from | |
| 23080 | 16467 ChEBI | L-arginine | + | carbon source | |
| 23080 | 16467 ChEBI | L-arginine | + | growth | |
| 23080 | 18287 ChEBI | L-fucose | - | builds acid from | |
| 23080 | 29985 ChEBI | L-glutamate | + | carbon source | |
| 23080 | 15971 ChEBI | L-histidine | - | carbon source | |
| 23080 | 15971 ChEBI | L-histidine | - | growth | |
| 23080 | 18019 ChEBI | L-lysine | + | carbon source | |
| 23080 | 15729 ChEBI | L-ornithine | - | carbon source | |
| 23080 | 62345 ChEBI | L-rhamnose | - | builds acid from | |
| 23080 | 17115 ChEBI | L-serine | - | carbon source | |
| 23080 | 17266 ChEBI | L-sorbose | - | builds acid from | |
| 23080 | 30924 ChEBI | L-tartrate | + | carbon source | |
| 23080 | 16828 ChEBI | L-tryptophan | - | builds acid from | |
| 23080 | 65328 ChEBI | L-xylose | - | builds acid from | |
| 23080 | 24996 ChEBI | lactate | + | carbon source | |
| 23080 | 17716 ChEBI | lactose | - | builds acid from | |
| 23080 | 6359 ChEBI | lactulose | - | builds acid from | |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 23080 | 18300 ChEBI | maleic acid | - | builds acid from | |
| 23080 | 18300 ChEBI | maleic acid | - | carbon source | |
| 23080 | 15792 ChEBI | malonate | + | carbon source | |
| 23080 | 68428 ChEBI | maltitol | - | builds acid from | |
| 23080 | 17306 ChEBI | maltose | - | builds acid from | |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 23080 | mannoic acid gamma-lactone | - | builds acid from | ||
| 23080 | 6731 ChEBI | melezitose | - | builds acid from | |
| 23080 | 28053 ChEBI | melibiose | - | builds acid from | |
| 23080 | 55507 ChEBI | methyl alpha-D-galactoside | - | builds acid from | |
| 23080 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | |
| 23080 | methyl alpha-D-xylopyranoside | - | builds acid from | ||
| 23080 | 17540 ChEBI | methyl beta-D-galactoside | - | builds acid from | |
| 23080 | 17268 ChEBI | myo-inositol | - | builds acid from | |
| 23080 | 506227 ChEBI | N-acetylglucosamine | - | builds acid from | |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 23080 | 17632 ChEBI | nitrate | + | reduction | |
| 118894 | 17632 ChEBI | nitrate | + | reduction | |
| 118894 | 17632 ChEBI | nitrate | + | respiration | |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 23080 | 16301 ChEBI | nitrite | + | reduction | |
| 118894 | 16301 ChEBI | nitrite | + | reduction | |
| 23080 | 18394 ChEBI | palatinose | - | builds acid from | |
| 23080 | 18401 ChEBI | phenylacetate | - | builds acid from | |
| 23080 | 15361 ChEBI | pyruvate | + | carbon source | |
| 23080 | 15361 ChEBI | pyruvate | + | growth | |
| 23080 | 16634 ChEBI | raffinose | - | builds acid from | |
| 23080 | 15963 ChEBI | ribitol | - | builds acid from | |
| 23080 | 17814 ChEBI | salicin | + | carbon source | |
| 23080 | 28017 ChEBI | starch | - | builds acid from | |
| 23080 | 30031 ChEBI | succinate | + | carbon source | |
| 23080 | 17992 ChEBI | sucrose | - | builds acid from | |
| 23080 | 15708 ChEBI | trans-aconitate | - | carbon source | |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 23080 | 32528 ChEBI | turanose | - | builds acid from | |
| 23080 | 16199 ChEBI | urea | + | carbon source | |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| 23080 | 17151 ChEBI | xylitol | - | builds acid from |
| @ref | ChEBI | Metabolite | Is sensitive | Sensitivity conc. | Is resistant | Resistance conc. | |
|---|---|---|---|---|---|---|---|
| 118894 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) | ||||||
| 23080 | 28971 | ampicillin | 10 µg | ||||
| 23080 | 17698 | chloramphenicol | 30 µg | ||||
| 23080 | 48923 | erythromycin | 15 µg | ||||
| 23080 | 18208 | penicillin g | 10 µg | ||||
| 23080 | 28077 | rifampicin | 5 µg | ||||
| 23080 | 17076 | streptomycin | 30 µg | ||||
| 23080 | 102484 | sulfisoxazole | 250 µg | ||||
| 23080 | 27902 | tetracycline | 30 µg |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 118894 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 118894 | amylase | - | ||
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 118894 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68369 | beta-glucosidase | - | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 118894 | caseinase | - | 3.4.21.50 | |
| 23080 | catalase | + | 1.11.1.6 | |
| 118894 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 23080 | cytochrome oxidase | + | 1.9.3.1 | |
| 68369 | cytochrome oxidase | + | 1.9.3.1 | from API 20NE |
| 118894 | DNase | + | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 118894 | gelatinase | - | ||
| 68369 | gelatinase | - | from API 20NE | |
| 118894 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 118894 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 118894 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 118894 | ornithine decarboxylase | - | 4.1.1.17 | |
| 118894 | oxidase | + | ||
| 118894 | protease | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 118894 | tryptophan deaminase | - | ||
| 118894 | tween esterase | - | ||
| 118894 | urease | - | 3.5.1.5 | |
| 68369 | urease | - | 3.5.1.5 | from API 20NE |
| 68382 | valine arylamidase | - | from API zym |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Engineered | #Waste | #Activated sludge | |
| #Engineered | #Waste | #Water treatment plant |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Isolation date | |
|---|---|---|---|---|---|---|---|
| 23080 | activated sludge in municipal wastewater treatment plants | Gustavsberg,Stockholm | Sweden | SWE | Europe | ||
| 56309 | Sludge,activated | Stockholm,Gustavsberg | Sweden | SWE | Europe | ||
| 7219 | activated sludge | Stockholm | Sweden | SWE | Europe | ||
| 118894 | Environment, Activated sludge in a municipal wastewater treatment plant | Gustavsberg | Sweden | SWE | Europe | 1990 |
Global distribution of 16S sequence AF233877 (>99% sequence identity) for Comamonas denitrificans subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|
| 124043 | ASM4265474v1 assembly for Comamonas denitrificans CCUG 44425 | scaffold | 117506 | 51.11 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 7219 | Comamonas denitrificans strain 123 16S ribosomal RNA gene, partial sequence | AF233877 | 1442 | 117506 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Comamonas denitrificans sp. nov., an efficient denitrifying bacterium isolated from activated sludge. | Gumaelius L, Magnusson G, Pettersson B, Dalhammar G | Int J Syst Evol Microbiol | 10.1099/00207713-51-3-999 | 2001 |
| #7219 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17887 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #23080 | L. Gumaelius,G. Magnusson,B. Pettersson,G. Dalhammar: Comamonas denitrificans sp. nov., an efficient denitrifying bacterium isolated from activated sludge.. IJSEM 51: 999 - 1006 2001 ( DOI 10.1099/00207713-51-3-999 , PubMed 11411726 ) |
| #36677 | ; Curators of the CIP; |
| #56309 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 44425 |
| #68369 | Automatically annotated from API 20NE . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #118894 | Collection of Institut Pasteur ; Curators of the CIP; CIP 108016 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive2932.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data