Strain identifier
BacDive ID: 2933
Type strain: 
Species: Comamonas thiooxydans
Strain Designation: S23
Strain history: S. K. Das S23.
NCBI tax ID(s): 363952 (species)
version 8.1 (current version)
General
@ref: 7220
BacDive-ID: 2933
DSM-Number: 17888
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Comamonas thiooxydans S23 is a mesophilic bacterium that was isolated from sulfur spring.
NCBI tax id
- NCBI tax id: 363952
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7220 | <- S. K. Das, Inst. Life Sci., Bhubaneswar, India; S23 |
| 67770 | S. K. Das S23. |
doi: 10.13145/bacdive2933.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Comamonas
- species: Comamonas thiooxydans
- full scientific name: Comamonas thiooxydans corrig. Narayan et al. 2011
synonyms
- @ref: 20215
- synonym: Comamonas thiooxidans
@ref: 7220
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Comamonas
species: Comamonas thiooxydans
full scientific name: Comamonas thiooxydans Narayan et al. 2011
strain designation: S23
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7220 | sulfur spring | Orissa, Athamallik | India | IND | Asia |
| 67770 | Sulfur spring |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Spring |
| #Condition | #Sulfuric |
taxonmaps
- @ref: 69479
- File name: preview.99_294.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_202;97_220;98_249;99_294&stattab=map
- Last taxonomy: Comamonas
- 16S sequence: DQ322069
- Sequence Identity:
- Total samples: 45208
- soil counts: 5571
- aquatic counts: 17183
- animal counts: 18603
- plant counts: 3851
Safety information
risk assessment
- @ref: 7220
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7220
- description: Comamonas thiooxydans strain S23 16S ribosomal RNA gene, partial sequence
- accession: DQ322069
- length: 1450
- database: ena
- NCBI tax ID: 363952
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Comamonas thiooxydans strain DSM 17888 | 363952.8 | wgs | patric | 363952 |
| 66792 | Comamonas thiooxydans strain DSM 17888 | 363952.7 | wgs | patric | 363952 |
| 66792 | Comamonas thiooxydans DSM 17888 | 2615840615 | draft | img | 363952 |
| 66792 | Comamonas thiooxydans DSM 17888 | 2773858010 | draft | img | 363952 |
| 67770 | Comamonas thiooxydans DSM 17888 | GCA_000964545 | contig | ncbi | 363952 |
| 67770 | Comamonas thiooxydans DSM 17888 | GCA_001517325 | scaffold | ncbi | 363952 |
| 67770 | Comamonas thiooxydans DSM 17888 | GCA_001418295 | scaffold | ncbi | 363952 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 7220 | 61.4 | high performance liquid chromatography (HPLC) |
| 67770 | 61.4 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | no | 98.628 | no |
| anaerobic | no | 98.333 | no |
| halophile | no | 94.877 | no |
| spore-forming | no | 95.638 | no |
| glucose-util | no | 77.077 | no |
| aerobic | yes | 93.008 | no |
| motile | yes | 85.552 | no |
| flagellated | yes | 74.287 | no |
| thermophile | no | 99.218 | no |
| glucose-ferment | no | 90.164 | no |
External links
@ref: 7220
culture collection no.: DSM 17888, JCM 14801
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | topic2 | mesh |
|---|---|---|---|---|---|---|---|---|
| Genetics | 27516520 | Draft Genome Sequence of Comamonas thiooxydans Strain S23T (DSM 17888T), a Thiosulfate-Oxidizing Bacterium Isolated from a Sulfur Spring in India. | Narayan KD, Badhai J, Whitman WB, Das SK | Genome Announc | 10.1128/genomeA.00834-16 | 2016 | Phylogeny | |
| Phylogeny | 35316175 | Comamonas fluminis sp. nov., isolated from the Han River, Republic of Korea. | Park EH, Kim YS, Cha CJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005287 | 2022 | Transcriptome | Bacterial Typing Techniques, Base Composition, *Comamonas/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rivers/microbiology, Sequence Analysis, DNA |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7220 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17888) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17888 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |