Clostridium senegalense (DSM 25507, CSUR P152, JC 122)

Name: Clostridium senegalense (DSM 25507, CSUR P152, JC 122)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2859

Type strain

Strain Designation JC 122, JC122

Culture col. no. DSM 25507 CSUR P152 JC 122 JC122

NCBI tax ID(s) 1465809

Special Collections DSMZ

History DSMZ <- J.-C. Lagier, Timone Hospital, Marseille, France; JC122

Links

Clostridium senegalense JC 122 is an anaerobe bacterium that was isolated from feces of a healthy 16-year-old man.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400098

DSM 25507

@ref 20215

Last LPSN update 2026-05-29 08:25:34

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium senegalense

Full scientific name Clostridium senegalense Mishra et al. 2015

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18045	PY + X MEDIUM (DSMZ Medium 104b)		Medium recipe at MediaDive	Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18045	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
18045	anaerobe
125439	facultative anaerobe	98.454

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Male

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
18045	feces of a healthy 16-year-old man	Homo sapiens	Dielmo	Senegal	SEN	Africa

Taxonmaps

69479

Global distribution of 16S sequence JF824801 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	3425
Soil Samples	1987
Animal Samples	1761
Plant Samples	242
Total Samples	7415

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18045	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM28557v1 assembly for Clostridium senegalense JC122 type strain: JC122	scaffold	GCA_000285575	1033737.3	2597489894	1033737	38.07

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18045	Clostridium senegalense JC122 16S ribosomal RNA gene, partial sequence	JF824801	1462		1033737

GC content

@ref	GC-content (mol%)	Method
18045	26.8	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM28557v1 assembly for Clostridium senegalense JC122 type strain: JC122
NCBI: GCA_000285575

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	98.45	no
125439	gram_stain	BacteriaNetⓘ	positive	67.47	no
125439	motility	BacteriaNetⓘ	yes	59.48	no
125439	spore_formation	BacteriaNetⓘ	yes	72.36	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Microbiota metabolism of intestinal amino acids impacts host nutrient homeostasis and physiology.	Li TT, Chen X, Huo D, Arifuzzaman M, Qiao S, Jin WB, Shi H, Li XV, JRI Live Cell Bank Consortium, Iliev ID, Artis D, Guo CJ.	Cell Host Microbe	10.1016/j.chom.2024.04.004	2024
Genetics	Draft Genome Sequence of Clostridium senegalense Strain AGRFS4, Isolated from a Dairy Farm in New Zealand.	Gupta TB, Jauregui R, Nawarathana AS, Brightwell G, Maclean P	Microbiol Resour Announc	10.1128/MRA.00214-20	2020
Genetics	Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov.	Mishra AK, Lagier JC, Robert C, Raoult D, Fournier PE	Stand Genomic Sci	10.4056/sigs.2766062	2012

References

#18045	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25507
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium senegalense (DSM 25507, CSUR P152, JC 122)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000285575

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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