Strain identifier
BacDive ID: 2859
Type strain:
Species: Clostridium senegalense
Strain Designation: JC 122, JC122
Strain history: <- J.-C. Lagier, Timone Hospital, Marseille, France; JC122
NCBI tax ID(s): 1465809 (species)
General
@ref: 18045
BacDive-ID: 2859
DSM-Number: 25507
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium senegalense JC 122 is an anaerobe, mesophilic bacterium that was isolated from feces of a healthy 16-year-old man.
NCBI tax id
- NCBI tax id: 1465809
- Matching level: species
strain history
- @ref: 18045
- history: <- J.-C. Lagier, Timone Hospital, Marseille, France; JC122
doi: 10.13145/bacdive2859.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium senegalense
- full scientific name: Clostridium senegalense Mishra et al. 2015
@ref: 18045
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium senegalense
full scientific name: Clostridium senegalense Mishra et al. 2015
strain designation: JC 122, JC122
type strain: yes
Culture and growth conditions
culture medium
- @ref: 18045
- name: PY + X MEDIUM (DSMZ Medium 104b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104b
- composition: Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 18045
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 18045
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 18045
- sample type: feces of a healthy 16-year-old man
- geographic location: Dielmo
- country: Senegal
- origin.country: SEN
- continent: Africa
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Patient | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
#Host | #Human | #Male |
taxonmaps
- @ref: 69479
- File name: preview.99_1939.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_705;97_1267;98_1522;99_1939&stattab=map
- Last taxonomy: Clostridium
- 16S sequence: JF824801
- Sequence Identity:
- Total samples: 7415
- soil counts: 1987
- aquatic counts: 3425
- animal counts: 1761
- plant counts: 242
Safety information
risk assessment
- @ref: 18045
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18045
- description: Clostridium senegalense JC122 16S ribosomal RNA gene, partial sequence
- accession: JF824801
- length: 1462
- database: ena
- NCBI tax ID: 1033737
Genome sequences
- @ref: 66792
- description: Clostridium senegalense JC122
- accession: 2597489894
- assembly level: draft
- database: img
- NCBI tax ID: 1033737
GC content
- @ref: 18045
- GC-content: 26.8
- method: sequence analysis
External links
@ref: 18045
culture collection no.: DSM 25507, CSUR P152
straininfo link
- @ref: 72383
- straininfo: 400098
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | topic2 |
---|---|---|---|---|---|---|---|
Genetics | 23408737 | Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov. | Mishra AK, Lagier JC, Robert C, Raoult D, Fournier PE | Stand Genomic Sci | 10.4056/sigs.2766062 | 2012 | Phylogeny |
Genetics | 32381610 | Draft Genome Sequence of Clostridium senegalense Strain AGRFS4, Isolated from a Dairy Farm in New Zealand. | Gupta TB, Jauregui R, Nawarathana AS, Brightwell G, Maclean P | Microbiol Resour Announc | 10.1128/MRA.00214-20 | 2020 | Phylogeny |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
18045 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25507) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25507 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
72383 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400098.1 | StrainInfo: A central database for resolving microbial strain identifiers |