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Strain identifier

BacDive ID: 2859

Type strain: Yes

Species: Clostridium senegalense

Strain Designation: JC 122, JC122

Strain history: <- J.-C. Lagier, Timone Hospital, Marseille, France; JC122

NCBI tax ID(s): 1465809 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18045

BacDive-ID: 2859

DSM-Number: 25507

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Clostridium senegalense JC 122 is an anaerobe, mesophilic bacterium that was isolated from feces of a healthy 16-year-old man.

NCBI tax id

  • NCBI tax id: 1465809
  • Matching level: species

strain history: <- J.-C. Lagier, Timone Hospital, Marseille, France; JC122

doi: 10.13145/bacdive2859.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium senegalense
  • full scientific name: Clostridium senegalense Mishra et al. 2015

@ref: 18045

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Clostridium

species: Clostridium senegalense

full scientific name: Clostridium senegalense Mishra et al. 2015

strain designation: JC 122, JC122

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 94.855

Culture and growth conditions

culture medium

  • @ref: 18045
  • name: PY + X MEDIUM (DSMZ Medium 104b)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104b
  • composition: Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 18045
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
18045anaerobe
69480anaerobe98.334

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 90.347

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 93.554

Isolation, sampling and environmental information

isolation

  • @ref: 18045
  • sample type: feces of a healthy 16-year-old man
  • geographic location: Dielmo
  • country: Senegal
  • origin.country: SEN
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Human#Male

taxonmaps

  • @ref: 69479
  • File name: preview.99_1939.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_705;97_1267;98_1522;99_1939&stattab=map
  • Last taxonomy: Clostridium
  • 16S sequence: JF824801
  • Sequence Identity:
  • Total samples: 7415
  • soil counts: 1987
  • aquatic counts: 3425
  • animal counts: 1761
  • plant counts: 242

Safety information

risk assessment

  • @ref: 18045
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18045
  • description: Clostridium senegalense JC122 16S ribosomal RNA gene, partial sequence
  • accession: JF824801
  • length: 1462
  • database: ena
  • NCBI tax ID: 1033737

Genome sequences

  • @ref: 66792
  • description: Clostridium senegalense JC122
  • accession: 2597489894
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1033737

GC content

  • @ref: 18045
  • GC-content: 26.8
  • method: sequence analysis

External links

@ref: 18045

culture collection no.: DSM 25507, CSUR P152

literature

topicPubmed-IDtitleauthorsjournalDOIyeartopic2
Genetics23408737Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov.Mishra AK, Lagier JC, Robert C, Raoult D, Fournier PEStand Genomic Sci10.4056/sigs.27660622012Phylogeny
Genetics32381610Draft Genome Sequence of Clostridium senegalense Strain AGRFS4, Isolated from a Dairy Farm in New Zealand.Gupta TB, Jauregui R, Nawarathana AS, Brightwell G, Maclean PMicrobiol Resour Announc10.1128/MRA.00214-202020Phylogeny

Reference

@idauthorscataloguedoi/urltitle
18045Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25507)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25507
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)