Tindallia magadiensis (DSM 10318, Z-7934)

Name: Tindallia magadiensis (DSM 10318, Z-7934)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2860

Type strain

Strain Designation Z-7934

Culture col. no. DSM 10318 Z-7934

NCBI tax ID(s) 69895

Special Collections DSMZ

Links

Tindallia magadiensis Z-7934 is an anaerobe, mesophilic prokaryote that was isolated from soda deposits.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 48811

DSM 10318

@ref 20215

Last LPSN update 2025-12-16 09:47:24

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Tindallia

Species Tindallia magadiensis

Full scientific name Tindallia magadiensis corrig. Kevbrin et al. 1999

Synonyms (1)

Tindallia magadii

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
3903	TINDALLIA MEDIUM (DSMZ Medium 798)		Medium recipe at MediaDive	Name: TINDALLIA MEDIUM (DSMZ Medium 798) Composition: NaCl 10.0 g/l Na2CO3 8.0 g/l Yeast extract 4.0 g/l Na2S x 9 H2O 0.5 g/l NH4Cl 0.5 g/l KCl 0.2 g/l K2HPO4 0.2 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Pyridoxine hydrochloride 1e-05 g/l H3BO3 6e-06 g/l (DL)-alpha-Lipoic acid 5e-06 g/l p-Aminobenzoic acid 5e-06 g/l Calcium D-(+)-pantothenate 5e-06 g/l Nicotinic acid 5e-06 g/l Thiamine HCl 5e-06 g/l Riboflavin 5e-06 g/l Biotin 2e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Folic acid 2e-06 g/l Vitamin B12 1e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
3903	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
3903	anaerobe
125439	anaerobe	98.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Condition	#Alkaline

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
3903	soda deposits	Lake Magadi	Kenya	KEN	Africa

Taxonmaps

69479

Global distribution of 16S sequence Y15626 (>99% sequence identity) for Tindallia from Microbeatlas

Aquatic Samples	37
Soil Samples	4
Animal Samples	4
Plant Samples	1
Total Samples	46

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3903	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2651870112 annotated assembly for Tindallia magadiensis Z-7934	scaffold	GCA_900113635	69895.3	2651870112	69895	71.49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
3903	Tindallia magadii 16S rRNA gene, partial	Y15626	1482		69895

GC content

3903

GC-content (mol%)37.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tindallia magadiensis Z-7934
NCBI: GCA_900113635

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	67.80	no
125439	motility	BacteriaNetⓘ	yes	68.10	no
125439	gram_stain	BacteriaNetⓘ	variable	86.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	98.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tindallia magadiensis Z-7934
NCBI: GCA_900113635.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	65.81	no
125438	anaerobic	anaerobicⓘ	yes	87.55	no
125438	aerobic	aerobicⓘ	no	93.91	yes
125438	spore-forming	spore-formingⓘ	yes	56.37	no
125438	thermophilic	thermophileⓘ	no	85.70	yes
125438	flagellated	motile2+ⓘ	yes	80.43	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tindallia californiensis sp. nov., a new anaerobic, haloalkaliphilic, spore-forming acetogen isolated from Mono Lake in California.	Pikuta EV, Hoover RB, Bej AK, Marsic D, Detkova EN, Whitman WB, Krader P	Extremophiles	10.1007/s00792-003-0326-7	2003
Phylogeny	Tindallia magadii gen. nov., sp. nov.: an alkaliphilic anaerobic ammonifier from soda lake deposits.	Kevbrin VV, Zhilina TN, Rainey FA, Zavarzin GA	Curr Microbiol	10.1007/s002849900345	1998

References

#3903	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10318
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tindallia magadiensis (DSM 10318, Z-7934)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900113635

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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