Name: Tindallia magadiensis Z-7934
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2860

Type strain:

Species: Tindallia magadiensis

Strain Designation: Z-7934

Culture col. no.: DSM 10318

Strain history: <- T.N. Zhilina, Inst. of Microbiology, Moscow, Russia

NCBI tax ID(s): 69895 (species)

SI-ID 48811

DSM 10318

Special Collections

DSMZ

Section

Tindallia magadiensis Z-7934 is an anaerobe, mesophilic bacterium that was isolated from soda deposits.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Tindallia*
	Species	**Tindallia magadiensis**
	Full Scientific Name (LPSN)	Tindallia magadiensis corrig. Kevbrin et al. 1999

Synonym

Tindallia magadii

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3903]

Culture medium

TINDALLIA MEDIUM (DSMZ Medium 798)

[Ref.: #3903]

Culture medium growth

[Ref.: #3903]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3903]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3903]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3903]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3903]	Sample type/isolated from	soda deposits
[Ref.: #3903]	Geographic location (country and/or sea, region)	Lake Magadi
[Ref.: #3903]	Country	Kenya
[Ref.: #3903]	Country ISO 3 Code	KEN
[Ref.: #3903]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Condition

#Alkaline

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y15626 (>99% sequence identity) for Tindallia from Microbeatlas

Aquatic Samples	37
Soil Samples	4
Animal Samples	4
Plant Samples	1
Total Samples	46

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3903]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3903]	Tindallia magadii 16S rRNA gene, partial	Y15626	1482	GenBank ENA	69895 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tindallia magadiensis Z-7934	GCA_900113635	scaffold	GenBank ENA	69895 tax ID	*
[Ref.: #66792]	Tindallia magadiensis Z-7934	2651870112	draft	JGI IMG/M	69895 tax ID	*

[Ref.: #3903]

GC-content

37.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Tindallia magadiensis Z-7934 NCBI: GCA_900113635.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	77	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tindallia magadiensis Z-7934 NCBI: GCA_900113635.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	65.812	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	87.548	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	93.909	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	56.374	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	85.704	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	80.426	no

Availability in culture collections External links

[Ref.: #3903]

Culture collection no.

DSM 10318

[Ref.: #72384]

SI-ID 48811

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tindallia californiensis sp. nov., a new anaerobic, haloalkaliphilic, spore-forming acetogen isolated from Mono Lake in California.	Pikuta EV, Hoover RB, Bej AK, Marsic D, Detkova EN, Whitman WB, Krader P	Extremophiles	10.1007/s00792-003-0326-7	2003	*
Phylogeny	Tindallia magadii gen. nov., sp. nov.: an alkaliphilic anaerobic ammonifier from soda lake deposits.	Kevbrin VV, Zhilina TN, Rainey FA, Zavarzin GA	Curr Microbiol	10.1007/s002849900345	1998	*

References

#3903

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10318

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72384

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48811.1 )

* These data were automatically processed and therefore are not curated

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