Aeromonas sobria (DSM 24388, ATCC 35993, CCUG 14550)

Name: Aeromonas sobria (DSM 24388, ATCC 35993, CCUG 14550)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 277

Type strain

Strain Designation Neilson 416

Culture col. no. DSM 24388 ATCC 35993 CCUG 14550 LMG 12670 NCTC 11215 4 more

NCBI tax ID(s) 646

Special Collections DSMZ CCUG CIP

Links

Aeromonas sobria Neilson 416 is a prokaryote that was isolated from activated sludge.

genome sequence

Name and taxonomic classification

SI-ID 14368

LMG 12670,ATCC 35993,CCUG 14550,NCTC 11215,DSM 24388,CECT 4053,CIP 111240

@ref 20215

Last LPSN update 2025-12-16 09:46:49

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Aeromonadales

Family Aeromonadaceae

Genus Aeromonas

Species Aeromonas sobria

Full scientific name Aeromonas sobria Popoff and Véron 1981

BacDive ID	Other strains from **Aeromonas sobria** (29)	Type strain
276	A. sobria strain 208, DSM 19176, ATCC 43979, CCM 2807, ... (type strain)
136142	A. sobria CIP 102812
136444	A. sobria AER 14M, CIP 105791
141456	A. sobria CCUG 1995
142088	A. sobria CCUG 10602
143881	A. sobria CCUG 21697
143882	A. sobria CCUG 21698
143883	A. sobria CCUG 21699
144610	A. sobria CCUG 25943, CIP 63.24, LMG 3784
144611	A. sobria CCUG 25944, LMG 3786
149067	A. sobria CCUG 36810
149306	A. sobria CCUG 37459, ATCC 35994, NCTC 11216
152452	A. sobria CCUG 46840
152946	A. sobria CCUG 48096
154494	A. sobria CCUG 53864
154518	A. sobria CCUG 53996
156919	A. sobria CCUG 67049
156932	A. sobria CCUG 67138
163164	A. sobria JCM 2137, CECT 4248
163167	A. sobria JCM 2138, CECT 4249
163174	A. sobria JCM 2140, CECT 4250
163181	A. sobria JCM 2141, CECT 4830
163183	A. sobria JCM 2142, CECT 4251
163184	A. sobria JCM 2143, CECT 4252
163186	A. sobria JCM 2144, CECT 4831
163188	A. sobria JCM 2145, CECT 4832
163196	A. sobria JCM 2146, CECT 4833
163263	A. sobria JCM 2366, CECT 4834
163264	A. sobria JCM 2367, ATCC 51106, CDC 0437-84, CECT 4835

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		92.172
125438		99.939	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
116259	CIP Medium 72		Medium recipe at CIP
17653	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17653	positive	growth	28

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.572

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68374	29016 ChEBI	arginine	+	hydrolysis	from API ID32E
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68374	17057 ChEBI	cellobiose	-	builds acid from	from API ID32E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68374	18333 ChEBI	D-arabitol	-	builds acid from	from API ID32E
68374	18024 ChEBI	D-galacturonic acid	-	builds acid from	from API ID32E
68374	17634 ChEBI	D-glucose	+	builds acid from	from API ID32E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68374	16899 ChEBI	D-mannitol	+	builds acid from	from API ID32E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68374	30849 ChEBI	L-arabinose	-	builds acid from	from API ID32E
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68374	62345 ChEBI	L-rhamnose	-	builds acid from	from API ID32E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68374	25094 ChEBI	lysine	-	degradation	from API ID32E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68374	15792 ChEBI	malonate	-	assimilation	from API ID32E
68374	17306 ChEBI	maltose	+	builds acid from	from API ID32E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68374	17268 ChEBI	myo-inositol	-	builds acid from	from API ID32E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68374	18257 ChEBI	ornithine	-	degradation	from API ID32E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68374		Potassium 5-ketogluconate	-	builds acid from	from API ID32E
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
68374	30911 ChEBI	sorbitol	-	builds acid from	from API ID32E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68374	17992 ChEBI	sucrose	+	builds acid from	from API ID32E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68374	27082 ChEBI	trehalose	+	builds acid from	from API ID32E
68374	27897 ChEBI	tryptophan	+	energy source	from API ID32E
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68374	16199 ChEBI	urea	-	hydrolysis	from API ID32E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68374	35581 ChEBI	indole	from API ID32E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68374	35581 ChEBI	indole		+	from API ID32E
68368	35581 ChEBI	indole		+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68374	alpha-galactosidase	-	3.2.1.22	from API ID32E
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68374	alpha-glucosidase	+	3.2.1.20	from API ID32E
68374	alpha-maltosidase	+		from API ID32E
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68374	arginine dihydrolase	+	3.5.3.6	from API ID32E
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
68374	beta-galactosidase	+	3.2.1.23	from API ID32E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	-	3.2.1.21	from API zym
68374	beta-glucosidase	-	3.2.1.21	from API ID32E
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68374	beta-glucuronidase	-	3.2.1.31	from API ID32E
68382	cystine arylamidase	-	3.4.11.3	from API zym
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
68368	gelatinase	+		from API 20E
68374	L-aspartate arylamidase	+	3.4.11.21	from API ID32E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68374	lipase	-		from API ID32E
68382	lipase (C 14)	-		from API zym
68374	lysine decarboxylase	-	4.1.1.18	from API ID32E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68374	ornithine decarboxylase	-	4.1.1.17	from API ID32E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68382	trypsin	-	3.4.21.4	from API zym
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68374	urease	-	3.5.1.5	from API ID32E
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

46129

Fatty acid	Percentage	ECL
C16:1 ω7c	39.2	15.819
C16:0	17.1	16
C18:1 ω7c /12t/9t	9.7	17.824
C12:0	5.1	12
C14:0 3OH/C16:1 ISO I	5.1	15.485
C14:0	3.5	14
C17:1 ω9c ISO	3.4	16.416
C15:0	2.7	15
C18:2 ω6,9c/C18:0 ANTE	2.6	17.724
C15:0 ISO	2.4	14.621
C17:0 iso	2.3	16.629
C17:1 ω8c	2.3	16.792
C15:0 ISO 3OH	1.9	16.135
C17:0	1.1	17
C16:1 ω7c alcohol	0.9	15.386
C16:0 iso	0.7	15.626

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
46129	+	+	-	-	-	-	-	-	+	-	+	+	+	-	-	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
46129	-	-	-	+	-	+	-	-	-	-	+	-	-	+	-	-	-	+	-	-

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
46129	-	+	-	-	-	-	-	-	+	-	+	+	-	-	-	-	+	-	+	+	+	-	-	+	-	+	-	-	-	-	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Activated sludge

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
17653	activated sludge	Sweden	SWE	Europe
46129	Sludge
116259	Environment, Sludge	Sweden	SWE	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17653	2	Risk group (German classification) According to TRBA 466
116259	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1602661v1 assembly for Aeromonas allosaccharophila FDAARGOS_933	complete	GCA_016026615	656.32	8071378868	656	98.69

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aeromonas allosaccharophila strain FDAARGOS_933 strain Not applicable
PATRIC: 656.32

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.94	no
125438	anaerobic	anaerobicⓘ	no	96.33	no
125438	spore-forming	spore-formingⓘ	no	90.57	no
125438	aerobic	aerobicⓘ	no	73.09	no
125438	thermophilic	thermophileⓘ	no	100.00	no
125438	flagellated	motile2+ⓘ	yes	92.17	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Light-scattering sensor for real-time identification of Vibrio parahaemolyticus, Vibrio vulnificus and Vibrio cholerae colonies on solid agar plate.	Huff K, Aroonnual A, Littlejohn AE, Rajwa B, Bae E, Banada PP, Patsekin V, Hirleman ED, Robinson JP, Richards GP, Bhunia AK.	Microb Biotechnol	10.1111/j.1751-7915.2012.00349.x	2012

References

#17653	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24388
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#46129	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 14550
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#68374	Automatically annotated from API ID32E .
#68382	Automatically annotated from API zym .
#116259	Collection of Institut Pasteur ; Curators of the CIP; CIP 111240
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aeromonas sobria (DSM 24388, ATCC 35993, CCUG 14550)

Name and taxonomic classification