Strain identifier

BacDive ID: 277

Type strain: No

Species: Aeromonas sobria

Strain Designation: Neilson 416

Strain history: CIP <- 2016, CCUG <- 1983, NCTC <- A.H. Neilson, Stockholm, Sweden: strain Neilson 416

NCBI tax ID(s): 646 (species)

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General

@ref: 17653

BacDive-ID: 277

DSM-Number: 24388

keywords: genome sequence, Bacteria, motile

description: Aeromonas sobria Neilson 416 is a motile bacterium that was isolated from activated sludge.

NCBI tax id

  • NCBI tax id: 646
  • Matching level: species

strain history

@refhistory
17653<- LMG <- CCUG <- NCTC <- A. Neilson, Swedish Air & Water Pollution Research Lab, Stockholm
116259CIP <- 2016, CCUG <- 1983, NCTC <- A.H. Neilson, Stockholm, Sweden: strain Neilson 416

doi: 10.13145/bacdive277.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas sobria
  • full scientific name: Aeromonas sobria Popoff and Véron 1981

@ref: 17653

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas sobria

full scientific name: Aeromonas sobria Popoff and Veron 1981

strain designation: Neilson 416

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes92.172
6948099.939negative

Culture and growth conditions

culture medium

  • @ref: 116259
  • name: CIP Medium 72
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no90.572
69481no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis
6837418257ornithine-degradation
6837429016arginine+hydrolysis
6837425094lysine-degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol+builds acid from
6837417306maltose+builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan+energy source
6837417634D-glucose+builds acid from
6837417992sucrose+builds acid from
6837430849L-arabinose-builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleyes
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6837435581indole+
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
68374L-aspartate arylamidase+3.4.11.21
68374alpha-maltosidase+
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase+3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase-
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase+3.5.3.6
68374ornithine decarboxylase-4.1.1.17
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    46129C12:05.112
    46129C14:03.514
    46129C15:02.715
    46129C16:017.116
    46129C17:01.117
    46129C14:0 3OH/C16:1 ISO I5.115.485
    46129C15:0 ISO2.414.621
    46129C15:0 ISO 3OH1.916.135
    46129C16:0 iso0.715.626
    46129C16:1 ω7c39.215.819
    46129C16:1 ω7c alcohol0.915.386
    46129C17:0 iso2.316.629
    46129C17:1 ω8c2.316.792
    46129C17:1 ω9c ISO3.416.416
    46129C18:1 ω7c /12t/9t9.717.824
    46129C18:2 ω6,9c/C18:0 ANTE2.617.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
46129---+-+----+--+---+--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
46129++------+-+++---+---+

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
46129-+------+-++----+-+++--+-+----++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
17653activated sludgeSwedenSWEEurope
46129Sludge
116259Environment, SludgeSwedenSWEEurope

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Waste
  • Cat3: #Activated sludge

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
176532Risk group (German classification)
1162591Risk group (French classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Aeromonas allosaccharophila strain FDAARGOS_933
  • accession: 656.32
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 656

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno99.939no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.327no
69480spore-formingspore-formingAbility to form endo- or exosporesno90.572no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no73.09no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno100no
69480flagellatedmotile2+Ability to perform flagellated movementyes92.172no

External links

@ref: 17653

culture collection no.: DSM 24388, ATCC 35993, CCUG 14550, LMG 12670, NCTC 11215, WDCM 00064, CIP 111240, CECT 4053

straininfo link

  • @ref: 69959
  • straininfo: 14368

Reference

@idauthorscataloguedoi/urltitle
17653Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24388)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24388
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
46129Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 14550)https://www.ccug.se/strain?id=14550
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
68374Automatically annotated from API ID32E
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69959Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14368.1StrainInfo: A central database for resolving microbial strain identifiers
116259Curators of the CIPCollection of Institut Pasteur (CIP 111240)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111240