Name: Aeromonas sobria DSM 19176
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 276

Type strain:

Species: Aeromonas sobria

Culture col. no.: DSM 19176, ATCC 43979, CCM 2807, CCUG 14830, CECT 4245, CIP 74.33, JCM 2139, LMG 3783, NCIMB 12065, NCTC 12979, CIP 74-33, BCRC 13066, CECT 837, HAMBI 1974, LMG 12159, VTT E-032002

Strain history: CIP <- 1974, M.Y. Popoff, Inst. Pasteur, Paris, France: strain 208, Aeromonas fastidiosa

NCBI tax ID(s): 646 (species)

SI-ID 389399

LMG 3783, ATCC 43979, CCM 2807, CCUG 14830, JCM 2139, LMG 12159, NCIMB 12065, NCIB 12065, NCTC 12979, CCRC 13066, CIP 7433, CECT 4245, CECT 837, BCRC 13066, HAMBI 1974, DSM 19176, CIP 74.33, CNCTC 5351, VTT E-032002, NCIB 1206

Special Collections

Other strains from Aeromonas sobria

Section

Aeromonas sobria DSM 19176 is a facultative anaerobe, motile human pathogen that was isolated from fish.

motile
facultative anaerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Aeromonadales*
	Family	*Aeromonadaceae*
	Genus	*Aeromonas*
	Species	**Aeromonas sobria**
	Full Scientific Name (LPSN)	Aeromonas sobria Popoff and Véron 1981

Information on morphological and physiological properties Morphology

[Ref.: #122646]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.494

[Ref.: #122646]	Cell shape	rod-shaped

[Ref.: #122646]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %90.586

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7949]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #7949]

Culture medium growth

[Ref.: #7949]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7949]

Culture medium composition

expand / minimize

[Ref.: #33491]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #33491]

Culture medium growth

[Ref.: #33491]

Culture medium composition

expand / minimize

[Ref.: #122646]

Culture medium

CIP Medium 72

[Ref.: #122646]

Culture medium growth

[Ref.: #122646]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122646]

Culture medium

CIP Medium 3

[Ref.: #122646]

Culture medium growth

[Ref.: #122646]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7949]		growth	28 °C
[Ref.: #33491]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #122646]		growth	5-30 °C
[Ref.: #122646]	no	growth	37 °C
[Ref.: #122646]	no	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122646]

Oxygen tolerance

facultative anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %91.072
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #122646]	NaCl		growth	0-2	%
[Ref.: #122646]	NaCl	no	growth	4	%
[Ref.: #122646]	NaCl	no	growth	6	%
[Ref.: #122646]	NaCl	no	growth	8	%
[Ref.: #122646]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #122646]	citrate ChEBI	+	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122646]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #122646]	glucose ChEBI	+	fermentation
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122646]	lactose ChEBI	-	fermentation
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #122646]	nitrate ChEBI	+	reduction
[Ref.: #122646]	nitrate ChEBI	+	respiration
[Ref.: #122646]	nitrite ChEBI	+	reduction
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122646]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122646]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite	Production
[Ref.: #122646]	indole ChEBI	yes
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	yes	* from API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #122646]	acetoin ChEBI	+
[Ref.: #122646]	glucose ChEBI		-
[Ref.: #68368]	indole ChEBI			+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122646]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122646]	amylase	+
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #122646]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API 20E
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122646]	caseinase	+	3.4.21.50
[Ref.: #122646]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68368]	cytochrome oxidase	+	1.9.3.1	* from API 20E
[Ref.: #122646]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122646]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #122646]	gelatinase	+
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #122646]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122646]	lipase	+
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #122646]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #122646]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #122646]	oxidase	+
[Ref.: #122646]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #122646]	tryptophan deaminase	-
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #122646]	tween esterase	-
[Ref.: #122646]	urease	-	3.5.1.5
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #46162]

Fatty acid	Percentage	ECL
C16:1 ω7c	38.4	15.819
C16:0	14.1	16
C14:0 3OH/C16:1 ISO I	7.7	15.485
C18:1 ω7c /12t/9t	7.3	17.824
C12:0	6.5	12
C14:0	4.3	14
C18:2 ω6,9c/C18:0 ANTE	2.5	17.724
C16:1 ω7c alcohol	2.1	15.386
C15:0 ISO 3OH	2	16.135
C15:0 ISO	1.7	14.621
C17:1 ω9c ISO	1.6	16.416
C17:0 iso	1.5	16.629
C13:0 iso	1.3	12.612
C17:1 ω8c	1.2	16.792
C15:0	1.2	15
C16:0 N alcohol	1	15.549
C17:0 10-methyl	0.9	17.41
Unidentified	0.7	17.327
Unidentified	0.4	13.94
C18:3 ω6,9,12c	0.4	17.577
C18:1 ω9c	0.4	17.769
C17:0	0.4	17
C13:0 ISO 2OH	0.4	13.814
C16:0 iso	0.4	15.626
C18:0	0.3	18
C17:1 ω6c	0.3	16.862
C13:0 3OH/C15:1 i I/H	0.3	14.469
C13:0	0.3	13
C12:0 3OH	0.2	13.455
C16:0 anteiso	0.2	15.717
Unidentified	0.2	15.28

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #7949]	16803	+	+	+	-	-	-	-	-	+	-	+	+	+	-	-	-	+	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #7949]	16786	+	+	+	-	+	-	-	-	+	+	+	+	+	-	-	-	+	-	+	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #122646]	12117	not determinedn.d.	+	-	-	+/-	+	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	+	+	-	-	-	-	+	+	-	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122646]	3329	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	-	-	-	-	+	-	+	-	+	-	-	+	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	-	-	-	+	-	-	+	+	+	+	+	+	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122646]	13268	-	+	+	+	+	+	-	+	+	-	+	-	-	+	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7949]	Sample type/isolated from	fish
[Ref.: #7949]	Country	France
[Ref.: #7949]	Country ISO 3 Code	FRA
[Ref.: #7949]	Continent	Europe

[Ref.: #46162]	Sample type/isolated from	Carp,Cyprinus carpio

[Ref.: #67770]	Sample type/isolated from	Fish

[Ref.: #122646]	Sample type/isolated from	Animal, Fish
* marker position based on {}

Isolation sources categories

#Host

#Fishes

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X60412 (>99% sequence identity) for Aeromonas from Microbeatlas

Aquatic Samples	24
Soil Samples
Animal Samples	12
Plant Samples	3
Total Samples	39

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7949]	Pathogenicity (human)	yes
[Ref.: #7949]	Pathogenicity (animal)	yes
[Ref.: #7949]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #122646]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7949]	A.sobria (ATCC 43979T) gene for 16S ribosomal RNA	X74683	1460	GenBank ENA	646 tax ID
[Ref.: #20218]	Aeromonas sobria 16S rRNA gene, strain NCIMB 12065	X60412	1503	GenBank ENA	646 tax ID	*
[Ref.: #20218]	Aeromonas sobria gene for 16S rRNA, partial sequence, strain: JCM 2139	AB472942	1414	GenBank ENA	646 tax ID	*
[Ref.: #20218]	Aeromonas sobria strain ATCC 43979 clone 1 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373994	517	GenBank ENA	646 tax ID	*
[Ref.: #20218]	Aeromonas sobria strain ATCC 43979 clone 2 16S-23S ribosomal RNA intergenic spacer, complete sequence	EF373995	513	GenBank ENA	646 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aeromonas sobria CECT 4245	GCA_000820145	scaffold	GenBank ENA	646 tax ID
[Ref.: #66792]	Aeromonas sobria CIP 74.33	GCA_018359945	contig	GenBank ENA	646 tax ID	*
[Ref.: #66792]	Aeromonas sobria CECT 4245	646.4	wgs	PATRIC	646 tax ID	*
[Ref.: #66792]	Aeromonas sobria strain CIP 74.33	646.37	wgs	PATRIC	646 tax ID	*
[Ref.: #66792]	Aeromonas sobria CECT 4245	2639763156	draft	JGI IMG/M	646 tax ID	*

[Ref.: #67770]

GC-content

58.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aeromonas sobria CECT 4245 NCBI: GCA_000820145.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aeromonas sobria CECT 4245 PATRIC: 646.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.494	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.382	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	73.905	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.072	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	100	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	90.586	no

Availability in culture collections External links

[Ref.: #7949]

Culture collection no.

DSM 19176, ATCC 43979, CCM 2807, CCUG 14830, CECT 4245, CIP 74.33, JCM 2139, LMG 3783, NCIMB 12065, NCTC 12979, CIP 74-33, BCRC 13066, CECT 837, HAMBI 1974, LMG 12159, VTT E-032002

[Ref.: #69958]

SI-ID 389399

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Aeromonas sharmana sp. nov., isolated from a warm spring.	Saha P, Chakrabarti T	Int J Syst Evol Microbiol	10.1099/ijs.0.63972-0	2006	*
	Strong Genomic and Phenotypic Heterogeneity in the Aeromonas sobria Species Complex.	Gauthier J, Vincent AT, Charette SJ, Derome N	Front Microbiol	10.3389/fmicb.2017.02434	2017	*

References

#7949

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19176

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33491 ; Curators of the CIP;
#46162 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 14830

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69958

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389399.1 )

#122646 Collection of Institut Pasteur ; Curators of the CIP; CIP 74.33
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Aeromonas sobria in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Aeromonas sobria CECT 4245

Aeromonas sobria CECT 4245

Change proposal

Change proposal