Name: Clostridium tetanomorphum 259 E.III.
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2727

Type strain:

Species: Clostridium tetanomorphum

Strain Designation: 259 E.III.

Culture col. no.: DSM 4474, ATCC 49273, NCTC 543

Strain history: <- NCTC <- M. Robertson, Lister Institute, London, U.K.; 259 E.III. {1920}

NCBI tax ID(s): 1553 (species)

SI-ID 42396

ATCC 49273, NCTC 543, DSM 4474, BCRC 14534, CCRC 14534

Special Collections

DSMZ

Other strains from Clostridium tetanomorphum

Section

Clostridium tetanomorphum 259 E.III. is an anaerobe, mesophilic bacterium that produces alcohol and was isolated from septic wound.

alcohol production
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium tetanomorphum**
	Full Scientific Name (LPSN)	Clostridium tetanomorphum (ex Bulloch et al. 1919) Wilde et al. 1989

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1687]

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)

[Ref.: #1687]

Culture medium growth

[Ref.: #1687]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1687]

Culture medium composition

expand / minimize

[Ref.: #1687]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #1687]

Culture medium growth

[Ref.: #1687]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1687]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1687]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1687]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %90.105

[Ref.: #1687]

Name of produced compound

n butanol

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1687]	Sample type/isolated from	septic wound
[Ref.: #1687]	Country	United Kingdom
[Ref.: #1687]	Country ISO 3 Code	GBR
[Ref.: #1687]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Host Body-Site	#Other	#Wound

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ241819 (>99% sequence identity) for Clostridium tetanomorphum subclade from Microbeatlas

Aquatic Samples	850
Soil Samples	1355
Animal Samples	6449
Plant Samples	176
Total Samples	8830

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1687]	Pathogenicity (human)	yes, in single cases
[Ref.: #1687]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1687]	Clostridium tetanomorphum strain DSM 4474 16S ribosomal RNA gene, partial sequence	DQ241819	1407	GenBank ENA	1553 tax ID
[Ref.: #20218]	Clostridium tetanomorphum strain DSM 4474 16S ribosomal RNA gene, partial sequence	DQ911261	320	GenBank ENA	1553 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium tetanomorphum DSM 4474	GCA_017873215	contig	GenBank ENA	1553 tax ID	*
[Ref.: #66792]	Clostridium tetanomorphum strain DSM 4474	1553.15	wgs	PATRIC	1553 tax ID	*
[Ref.: #66792]	Clostridium tetanomorphum DSM 4474	2913338184	draft	JGI IMG/M	1553 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium tetanomorphum strain DSM 4474 PATRIC: 1553.15
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	50.732	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	90.105	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	76.797	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	88.663	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	96.642	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	75.259	no

Availability in culture collections External links

[Ref.: #1687]

Culture collection no.

DSM 4474, ATCC 49273, NCTC 543

[Ref.: #72255]

SI-ID 42396

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Clostridium beihaiense sp. nov., an anaerobic bacterium isolated from activated sludge.	Dong Y, Liu Y, Chen N, Zhong Y, Liu L, Xie Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.002885	2018	*
Phylogeny	Clostridium liquoris sp. nov., isolated from a fermentation pit used for the production of Chinese strong-flavoured liquor.	Yin Q, Tao Y, Zhu X, Zhou Y, He X, Cheng L, Huang Y, Li D	Int J Syst Evol Microbiol	10.1099/ijsem.0.000787	2015	*
Phylogeny	Clostridium lundense sp. nov., a novel anaerobic lipolytic bacterium isolated from bovine rumen.	Cirne DG, Delgado OD, Marichamy S, Mattiasson B	Int J Syst Evol Microbiol	10.1099/ijs.0.63730-0	2006	*

References

#1687

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4474

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#72255

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42396.1 )

* These data were automatically processed and therefore are not curated

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Clostridium tetanomorphum strain DSM 4474

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