Name: Hathewaya histolytica Weinberg
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2601

Type strain:

Species: Hathewaya histolytica

Strain Designation: Weinberg, LRA 050 07 85

Culture col. no.: DSM 2158, ATCC 19401, BCRC 10644, CCUG 4854, CIP 103713, CN 1693, JCM 1403, NCIMB 503, NCTC 503, CECT 4109, KCTC 5010

Strain history: CIP <- 1993, R. Mercier, bioMérieux, La Balme les Grottes, France: strain LRA 050 07 85 <- 1985, Analytab, Plainview, USA

NCBI tax ID(s): 1498 (species)

SI-ID 36971

ATCC 19401, NCTC 503, CCUG 4854, NCIB 503, DSM 2158, CECT 4109, CIP 103713, JCM 1403, CCRC 10644, NCIMB 503, KCTC 5010, BCRC 10644, CECT 7093, VTT E-052779

Special Collections

Other strains from Hathewaya histolytica

Section

Hathewaya histolytica Weinberg is an anaerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from gas gangrene.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Hathewaya*
	Species	**Hathewaya histolytica**
	Full Scientific Name (LPSN)	Hathewaya histolytica (Weinberg and Séguin 1916) Lawson and Rainey 2016

	Synonym	"Bacillus* histolyticus"*
	Synonym	Clostridium histolyticum

Information on morphological and physiological properties Morphology

[Ref.: #43779]	Gram stain	positive
[Ref.: #119925]	Gram stain	positive

[Ref.: #43779]	Cell length	1.3-9.2 µm

[Ref.: #43779]	Cell width	0.5-0.9 µm

[Ref.: #43779]	Cell shape	rod-shaped
[Ref.: #119925]	Cell shape	rod-shaped

[Ref.: #43779]	Motility	yes
[Ref.: #119925]	Motility	yes

[Ref.: #43779]	Flagellum arrangement	peritrichous

[Ref.: #43779]	Type of hemolysis	beta
[Ref.: #43779]	Hemolysis ability	1
[Ref.: #43779]	Colony size	0.5-2 mm
[Ref.: #43779]	Colony color	Grey-white
[Ref.: #43779]	Colony shape	circular
[Ref.: #43779]	Cultivation medium used	Blood agar plates

Information on culture and growth conditions Culture and growth conditions

[Ref.: #984]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #984]

Culture medium growth

[Ref.: #984]

Culture medium link

Medium recipe at MediaDive

[Ref.: #984]

Culture medium composition

expand / minimize

[Ref.: #38136]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #38136]

Culture medium growth

[Ref.: #38136]

Culture medium composition

expand / minimize

[Ref.: #43779]

Culture medium

Blood agar plates

[Ref.: #43779]

Culture medium growth

[Ref.: #119925]

Culture medium

CIP Medium 20

[Ref.: #119925]

Culture medium growth

[Ref.: #119925]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #984]	growth	37 °C
[Ref.: #38136]	growth	37 °C
[Ref.: #43779]	optimum	37 °C
[Ref.: #44794]	growth	37 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #43779]			optimum	8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #984]	Oxygen tolerance	anaerobe
[Ref.: #44794]	Oxygen tolerance	anaerobe
[Ref.: #119925]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %90.913

[Ref.: #43779]	Spore description	Oval, central to subterminal, and may slightly sewll the cell
[Ref.: #43779]	Type of spore	spore
[Ref.: #43779]	Ability of spore formation	yes
[Ref.: #119925]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %90

[Ref.: #43779]	Observation	Supernatant culture fluids are toxic to mice
[Ref.: #43779]	Observation	Strains are highly pathogenic to laboratory animals

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43779]	arginine ChEBI	+	energy source
[Ref.: #43779]	aspartate ChEBI	+	energy source
[Ref.: #43779]	casein	+	degradation
[Ref.: #43779]	collagen ChEBI	+	degradation
[Ref.: #43779]	elastin ChEBI	+	degradation
[Ref.: #119925]	esculin ChEBI	-	hydrolysis
[Ref.: #43779]	fibrin ChEBI	+	degradation
[Ref.: #43779]	gelatin ChEBI	+	degradation
[Ref.: #43779]	glutamate ChEBI	+	energy source
[Ref.: #43779]	glycine ChEBI	+	energy source
[Ref.: #43779]	meat extract	+	degradation
[Ref.: #43779]	milk	+	degradation
[Ref.: #119925]	nitrate ChEBI	-	reduction
[Ref.: #119925]	nitrate ChEBI	+	respiration
[Ref.: #119925]	nitrite ChEBI	-	reduction
[Ref.: #43779]	serine ChEBI	+	energy source
[Ref.: #43779]	threonine ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity
[Ref.: #43779]	chloramphenicol ChEBI	yes
[Ref.: #43779]	clindamycin ChEBI	yes
[Ref.: #43779]	erythromycin ChEBI	yes
[Ref.: #43779]	penicillin g ChEBI	yes
[Ref.: #43779]	tetracycline ChEBI	yes

	Metabolite	Production
[Ref.: #43779]	alanine ChEBI	yes
[Ref.: #43779]	ammonia ChEBI	yes
[Ref.: #43779]	dihydrogen ChEBI	yes
[Ref.: #43779]	hydrogen sulfide ChEBI	yes
[Ref.: #119925]	indole ChEBI	no
[Ref.: #43779]	isoleucine ChEBI	yes
[Ref.: #43779]	leucine ChEBI	yes
[Ref.: #43779]	lysine ChEBI	yes
[Ref.: #43779]	proline ChEBI	yes
[Ref.: #43779]	valine ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119925]	amylase	-
[Ref.: #119925]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119925]	caseinase	+	3.4.21.50
[Ref.: #119925]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #43779]	DNase	+
[Ref.: #119925]	DNase	+
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #119925]	gelatinase	+/-
[Ref.: #119925]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119925]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119925]	oxidase	-
[Ref.: #119925]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #119925]	tween esterase	-
[Ref.: #119925]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119925]	470	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119925]	7641	-	-	-	-	-	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	vitamin B12 metabolism	85.29	29 of 34
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	biotin biosynthesis	75	3 of 4
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	purine metabolism	74.47	70 of 94
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	heme metabolism	71.43	10 of 14
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	glutamate and glutamine metabolism	67.86	19 of 28
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	non-pathway related	60.53	23 of 38
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	oxidative phosphorylation	57.14	52 of 91
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	tryptophan metabolism	52.63	20 of 38
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	threonine metabolism	50	5 of 10
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	isoprenoid biosynthesis	50	13 of 26
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	tetrahydrofolate metabolism	50	7 of 14
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	isoleucine metabolism	50	4 of 8
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	lysine metabolism	45.24	19 of 42
[Ref.: #66794]	lipid metabolism	45.16	14 of 31
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	cysteine metabolism	44.44	8 of 18
[Ref.: #66794]	CO2 fixation in Crenarchaeota	44.44	4 of 9
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	glycogen metabolism	40	2 of 5
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	histidine metabolism	37.93	11 of 29
[Ref.: #66794]	arginine metabolism	37.5	9 of 24
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	pentose phosphate pathway	36.36	4 of 11
[Ref.: #66794]	citric acid cycle	35.71	5 of 14
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	valine metabolism	33.33	3 of 9
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	molybdenum cofactor biosynthesis	33.33	3 of 9
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of pentoses	32.14	9 of 28
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	urea cycle	30.77	4 of 13
[Ref.: #66794]	leucine metabolism	30.77	4 of 13
[Ref.: #66794]	sulfate reduction	30.77	4 of 13
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	propionate fermentation	30	3 of 10
[Ref.: #66794]	glutathione metabolism	28.57	4 of 14
[Ref.: #66794]	metabolism of disaccharids	27.27	3 of 11
[Ref.: #66794]	vitamin B6 metabolism	27.27	3 of 11
[Ref.: #66794]	polyamine pathway	26.09	6 of 23
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	lipid A biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #984]	Sample type/isolated from	gas gangrene

[Ref.: #43779]	Sample type/isolated from	Soil, war wounds, gas gangrene in humans and horses, human intestinal contents; gingival plaque of institutionalized and primitive populations

[Ref.: #44794]	Sample type/isolated from	Gas gangrene
[Ref.: #44794]	Sampling date	1916

[Ref.: #67770]	Sample type/isolated from	Gas gangrene

[Ref.: #119925]	Sample type/isolated from	Human, Gangrene
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Environmental	#Terrestrial	#Soil
#Host	#Human	-
#Host Body-Site	#Gastrointestinal tract	-
#Host Body-Site	#Oral cavity and airways	#Gingiva
#Host Body-Site	#Oral cavity and airways	#Plaque

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HF558362 (>99% sequence identity) for Hathewaya histolytica subclade from Microbeatlas

Aquatic Samples	299
Soil Samples	97
Animal Samples	1240
Plant Samples	21
Total Samples	1657

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #984]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #119925]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #984]	Clostridium histolyticum gene for 16S ribosomal RNA, partial sequence	AB566416	1476	GenBank ENA	1498 tax ID
[Ref.: #20218]	Clostridium histolyticum 16S ribosomal RNA	M59094	1465	GenBank ENA	1498 tax ID	*
[Ref.: #20218]	Clostridium histolyticum partial 16S rRNA gene, strain ATCC 19401	HF558362	1460	GenBank ENA	1498 tax ID	*
[Ref.: #20218]	Clostridium histolyticum strain DSM 2158 16S ribosomal RNA gene, partial sequence	HM245945	745	GenBank ENA	1498 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hathewaya histolytica NCTC503	GCA_901482605	complete	GenBank ENA	1498 tax ID	*
[Ref.: #66792]	Hathewaya histolytica strain NCTC503	1498.4	complete	PATRIC	1498 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Hathewaya histolytica NCTC503 NCBI: GCA_901482605.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	90	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hathewaya histolytica NCTC503 NCBI: GCA_901482605.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	79.119	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	90.913	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.483	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	81.461	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	88.44	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	80.834	yes

Availability in culture collections External links

[Ref.: #984]

Culture collection no.

DSM 2158, ATCC 19401, BCRC 10644, CCUG 4854, CIP 103713, CN 1693, JCM 1403, NCIMB 503, NCTC 503, CECT 4109, KCTC 5010

[Ref.: #72132]

SI-ID 36971

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanirhabdus sediminicola gen. nov., sp. nov., an anaerobic bacterium isolated from sea sediment.	Pi RX, Zhang WW, Fang MX, Zhang YZ, Li TT, Wu M, Zhu XF	Int J Syst Evol Microbiol	10.1099/ijs.0.051243-0	2013	*
Enzymology	Cloning and nucleotide sequence analysis of the colH gene from Clostridium histolyticum encoding a collagenase and a gelatinase.	Yoshihara K, Matsushita O, Minami J, Okabe A	J Bacteriol	10.1128/jb.176.21.6489-6496.1994	1994	*

References

#984	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2158

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38136 ; Curators of the CIP;

#43779

Paul A. Lawson, Fred A. Rainey: Proposal to restrict the genus Clostridium Prazmowski to Clostridium butyricum and related species. IJSEM 66: 1009 - 1016 2016 ( DOI 10.1099/ijsem.0.000824 , PubMed 26643615 )

#44794 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 4854

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72132

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36971.1 )

#119925 Collection of Institut Pasteur ; Curators of the CIP; CIP 103713
* These data were automatically processed and therefore are not curated

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Hathewaya histolytica NCTC503

Hathewaya histolytica NCTC503

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