Name: Acidihalobacter ferrooxydans V8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24820

Type strain:

Species: Acidihalobacter ferrooxydans

Strain Designation: V8

Culture col. no.: DSM 14175, JCM 32254

Strain history: E. Watkin; Curtin Univ., Australia <-- DSM 14175 <-- P. R. Norris; Univ. Warwick, UK; V8.

NCBI tax ID(s): 1765967 (species)

SI-ID 396780

DSM 14175

Special Collections

Section

Acidihalobacter ferrooxydans V8 is an aerobe, halotolerant, chemolithoautotroph bacterium that was isolated from acidic, salty water.

Gram-negative
motile
rod-shaped
aerobe
chemolithoautotroph
halotolerant
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Ectothiorhodospiraceae*
	Genus	*Acidihalobacter*
	Species	**Acidihalobacter ferrooxydans**
	Full Scientific Name (LPSN)	Acidihalobacter ferrooxydans Khaleque et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67866]	Gram stain	negative

[Ref.: #67866]	Cell length	1 µm

[Ref.: #67866]	Cell shape	rod-shaped

[Ref.: #67866]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5242]

Culture medium

ACIDIHALOBACTER FERROOXIDANS MEDIUM (DSMZ Medium 1321)

[Ref.: #5242]

Culture medium growth

[Ref.: #5242]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5242]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5242]	growth	35 °C
[Ref.: #67770]	growth	35 °C
[Ref.: #67866]	growth	26-43 °C
[Ref.: #67866]	optimum	36 °C

	pH	Kind of pH		pH
[Ref.: #67866]			optimum	1.8
[Ref.: #67866]			growth	1-3

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67866]

Oxygen tolerance

aerobe

[Ref.: #67866]

Nutrition type

chemolithoautotroph

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #67866]

Halophily / tolerance level

halotolerant

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #67866]		NaCl		growth	0.06-0.856	M
[Ref.: #67866]		NaCl		optimum	0.428	M

[Ref.: #67866]	Observation	Cells under stress sometimes are curved.
[Ref.: #67866]	Observation	Grows optimally on the sulfide mineral pyrite at 856 mM NaCl.

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67866]		tetrathionate ChEBI	+	electron donor

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5242]	Sample type/isolated from	acidic, salty water
[Ref.: #5242]	Geographic location (country and/or sea, region)	Aeolian Islands, Vulcano
[Ref.: #5242]	Country	Italy
[Ref.: #5242]	Country ISO 3 Code	ITA
[Ref.: #5242]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Acidic, salty water, Vulcano
[Ref.: #67770]	Geographic location (country and/or sea, region)	Aeolian Islands
[Ref.: #67770]	Country	Italy
[Ref.: #67770]	Country ISO 3 Code	ITA
[Ref.: #67770]	Continent	Europe

[Ref.: #67866]	Sample type/isolated from	shallow pools of acidic, salty water in Vulcano
[Ref.: #67866]	Geographic location (country and/or sea, region)	Aeolian Islands, Vulcano
[Ref.: #67866]	Country	Italy
[Ref.: #67866]	Country ISO 3 Code	ITA
[Ref.: #67866]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Condition	#Acidic	-
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU213664 (>99% sequence identity) for Acidihalobacter ferrooxydans subclade from Microbeatlas

Aquatic Samples	337
Soil Samples	65
Animal Samples	8
Plant Samples	8
Total Samples	418

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5242]	Acidihalobacter ferrooxydans strain DSM 14175 16S ribosomal RNA gene, partial sequence	KU213664	1426	GenBank ENA	1765967 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acidihalobacter ferrooxydans V8	GCA_001975725	chromosome	GenBank ENA	1765967 tax ID	*
[Ref.: #66792]	Acidihalobacter ferrooxidans strain V8	1765967.4	wgs	PATRIC	1765967 tax ID	*
[Ref.: #66792]	Acidihalobacter ferrooxydans V8	2751185721	complete	JGI IMG/M	1765967 tax ID	*

[Ref.: #5242]	GC-content	61.6 mol%	sequence analysis
[Ref.: #67770]	GC-content	61.6 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acidihalobacter ferrooxydans V8 NCBI: GCA_001975725.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

Availability in culture collections External links

[Ref.: #5242]

Culture collection no.

DSM 14175, JCM 32254

[Ref.: #88641]

SI-ID 396780

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Genome-based classification of Acidihalobacter prosperus F5 (=DSM 105917=JCM 32255) as Acidihalobacter yilgarnensis sp. nov.	Khaleque HN, Gonzalez C, Johnson DB, Kaksonen AH, Holmes DS, Watkin ELJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004519	2020	*
Phylogeny	Genome-based classification of two halotolerant extreme acidophiles, Acidihalobacter prosperus V6 (=DSM 14174 =JCM 32253) and 'Acidihalobacter ferrooxidans' V8 (=DSM 14175 =JCM 32254) as two new species, Acidihalobacter aeolianus sp. nov. and Acidihalobacter ferrooxydans sp. nov., respectively.	Khaleque HN, Gonzalez C, Kaksonen AH, Boxall NJ, Holmes DS, Watkin ELJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003313	2019	*
	Prediction and Inferred Evolution of Acid Tolerance Genes in the Biotechnologically Important Acidihalobacter Genus.	Boase K, Gonzalez C, Vergara E, Neira G, Holmes D, Watkin E	Front Microbiol	10.3389/fmicb.2022.848410	2022	*

References

#5242

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14175

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#67866

Himel N. Khaleque, Carolina González, Anna H. Kaksonen, Naomi J. Boxall, David S. Holmes, Elizabeth L. J. Watkin: Genome-based classification of two halotolerant extreme acidophiles, Acidihalobacter prosperus V6 (=DSM 14174 =JCM 32253) and 'Acidihalobacter ferrooxidans' V8 (=DSM 14175 =JCM 32254) as two new species, Acidihalobacter aeolianus sp. nov. and Acidihalobacter ferrooxydans sp. nov., respectively. IJSEM 69: 1557 - 1565 2019 ( DOI 10.1099/ijsem.0.003313 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88641

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396780.1 )

* These data were automatically processed and therefore are not curated

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