Actinopolyspora mzabensis (DSM 45460, CCUG 62965, H55)

Name: Actinopolyspora mzabensis (DSM 45460, CCUG 62965, H55)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24730

Type strain

Strain Designation H55

Culture col. no. DSM 45460 CCUG 62965 H55

NCBI tax ID(s) 995066

Special Collections DSMZ CCUG Literature strains

Links

Actinopolyspora mzabensis H55 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from arid soil from a palm grove.

spore-forming Gram-positive rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402809

DSM 45460,CCUG 62965

@ref 20215

Last LPSN update 2025-12-16 09:52:55

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Actinopolyspora

Species Actinopolyspora mzabensis

Full scientific name Actinopolyspora mzabensis Meklat et al. 2013

BacDive ID	Other strains from **Actinopolyspora mzabensis** (1)	Type strain
159584	A. mzabensis H202, DSM 46671

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
30881	positive	1.45 µm	0.55 µm	rod-shaped
125438
125438	positive
125439	positive

Colony morphology

62916

Incubation period18-20 days

Pigmentation

30881

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
20252	GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159) Composition: NaCl 100.0 g/l Agar 15.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
20252	CM-MEDIUM (DSMZ Medium 1504)	Medium recipe at MediaDive	Name: CM-MEDIUM (DSMZ Medium 1504) Composition: NaCl 150.0 g/l Agar 20.0 g/l MgSO4 x 7 H2O 10.0 g/l Yeast extract 10.0 g/l Peptone 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O Distilled water
20252	NUTRIMENT AGAR WITH 150G/L NACL (DSMZ Medium 1258)	Medium recipe at MediaDive	Name: NUTRIMENT AGAR WITH 150G/L NACL (DSMZ Medium 1258) Composition: NaCl 150.0 g/l Agar 20.0 g/l Peptone 5.0 g/l Yeast extract 2.0 g/l Meat extract 1.0 g/l Distilled water
20252	CM + YE MEDIUM (DSMZ Medium 549)	Medium recipe at MediaDive	Name: CM + YE MEDIUM (DSMZ Medium 549) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Casamino acids 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O 0.01 g/l HCl 3.646e-05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20252	positive	growth	28	mesophilic
30881	positive	growth	20-40
30881	positive	optimum	30	mesophilic
62916	positive	growth	20-30

Culture pH

@ref	Ability	Type	PH
30881	positive	optimum	7
30881	positive	growth	05-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
30881	aerobe
62916	aerobe

Spore formation

30881

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30881	NaCl	positive	growth	07-32 %(w/v)
30881	NaCl	positive	optimum	10-28 %

Observation

30881

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30881	16449 ChEBI	alanine	+	carbon source
30881	22599 ChEBI	arabinose	+	carbon source
30881	17057 ChEBI	cellobiose	+	carbon source
30881	16947 ChEBI	citrate	+	carbon source
30881	28757 ChEBI	fructose	+	carbon source
30881	28260 ChEBI	galactose	+	carbon source
30881	17234 ChEBI	glucose	+	carbon source
30881	17754 ChEBI	glycerol	+	carbon source
30881	17716 ChEBI	lactose	+	carbon source
30881	17306 ChEBI	maltose	+	carbon source
30881	37684 ChEBI	mannose	+	carbon source
30881	17632 ChEBI	nitrate	+	reduction
30881	26271 ChEBI	proline	+	carbon source
30881	26546 ChEBI	rhamnose	+	carbon source
30881	15963 ChEBI	ribitol	+	carbon source
30881	33942 ChEBI	ribose	+	carbon source
30881	30911 ChEBI	sorbitol	+	carbon source
30881	17992 ChEBI	sucrose	+	carbon source
30881	27082 ChEBI	trehalose	+	carbon source
30881	18222 ChEBI	xylose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Climate	#Hot	#Arid

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
20252	arid soil from a palm grove	Sahara, Mzab region, Ghardaia, Ntissa palm grove (Béni-isguen), 32° 29' N 3° 41' E	Algeria	DZA	Africa	32.4833	3.6833 32.4833/3.6833
62916	Soil,Sahara desert	Chardaia,Mzab region	Algeria	DZA	Africa

Taxonmaps

69479

Global distribution of 16S sequence HQ918202 (>99% sequence identity) for Actinopolyspora mzabensis from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples
Plant Samples
Total Samples	1

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20252	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2619619027 annotated assembly for Actinopolyspora mzabensis DSM 45460	scaffold	GCA_900101095	995066.3	2619619027	995066	71.14

Genome browser: GCA_900101095

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20252	Actinopolyspora mzabensis strain H55 16S ribosomal RNA gene, partial sequence	HQ918202	1530		995066

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinopolyspora mzabensis DSM 45460
NCBI: GCA_900101095

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	56.70	no
125439	motility	BacteriaNetⓘ	no	88.90	no
125439	gram_stain	BacteriaNetⓘ	positive	95.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	71.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinopolyspora mzabensis DSM 45460
NCBI: GCA_900101095.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.29	yes
125438	anaerobic	anaerobicⓘ	no	95.25	no
125438	aerobic	aerobicⓘ	yes	87.77	yes
125438	spore-forming	spore-formingⓘ	yes	85.03	yes
125438	thermophilic	thermophileⓘ	no	96.05	no
125438	flagellated	motile2+ⓘ	no	91.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinopolyspora mzabensis sp. nov., a halophilic actinomycete isolated from an Algerian Saharan soil.	Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Sproer C, Klenk HP, Sabaou N	Int J Syst Evol Microbiol	10.1099/ijs.0.046649-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20252	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45460
#30881	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27211 (see below)
#62916	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62965
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinopolyspora mzabensis (DSM 45460, CCUG 62965, H55)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900101095

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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