Name: Actinopolyspora mzabensis H55
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24730

Type strain:

Species: Actinopolyspora mzabensis

Strain Designation: H55

Culture col. no.: DSM 45460, CCUG 62965

Strain history: <- N. Sabaou, LPBVB, Kouba, Algeria; H55

NCBI tax ID(s): 995066 (species)

SI-ID 402809

DSM 45460, CCUG 62965

Special Collections

Other strains from Actinopolyspora mzabensis

Section

Actinopolyspora mzabensis H55 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from arid soil from a palm grove.

Gram-positive
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinopolyspora*
	Species	**Actinopolyspora mzabensis**
	Full Scientific Name (LPSN)	Actinopolyspora mzabensis Meklat et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30881]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %91.293

[Ref.: #30881]	Cell length	1.45 µm

[Ref.: #30881]	Cell width	0.55 µm

[Ref.: #30881]	Cell shape	rod-shaped

[Ref.: #30881]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91

[Ref.: #62916]

Incubation period

18-20 days

[Ref.: #30881]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20252]

Culture medium

GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159)

[Ref.: #20252]

Culture medium growth

[Ref.: #20252]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #20252]

Culture medium

CM-MEDIUM (DSMZ Medium 1504)

[Ref.: #20252]

Culture medium growth

[Ref.: #20252]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #20252]

Culture medium

NUTRIMENT AGAR WITH 150G/L NACL (DSMZ Medium 1258)

[Ref.: #20252]

Culture medium growth

[Ref.: #20252]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #20252]

Culture medium

CM + YE MEDIUM (DSMZ Medium 549)

[Ref.: #20252]

Culture medium growth

[Ref.: #20252]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20252]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20252]	growth	28 °C
[Ref.: #30881]	growth	20-40 °C
[Ref.: #30881]	optimum	30 °C
[Ref.: #62916]	growth	20-30 °C

	pH	Kind of pH		pH
[Ref.: #30881]			optimum	7
[Ref.: #30881]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30881]	Oxygen tolerance	aerobe
[Ref.: #62916]	Oxygen tolerance	aerobe

[Ref.: #30881]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30881]		NaCl		growth	07-32	%(w/v)
[Ref.: #30881]		NaCl		optimum	10-28	%

[Ref.: #30881]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30881]	alanine ChEBI	+	carbon source
[Ref.: #30881]	arabinose ChEBI	+	carbon source
[Ref.: #30881]	cellobiose ChEBI	+	carbon source
[Ref.: #30881]	citrate ChEBI	+	carbon source
[Ref.: #30881]	fructose ChEBI	+	carbon source
[Ref.: #30881]	galactose ChEBI	+	carbon source
[Ref.: #30881]	glucose ChEBI	+	carbon source
[Ref.: #30881]	glycerol ChEBI	+	carbon source
[Ref.: #30881]	lactose ChEBI	+	carbon source
[Ref.: #30881]	maltose ChEBI	+	carbon source
[Ref.: #30881]	mannose ChEBI	+	carbon source
[Ref.: #30881]	nitrate ChEBI	+	reduction
[Ref.: #30881]	proline ChEBI	+	carbon source
[Ref.: #30881]	rhamnose ChEBI	+	carbon source
[Ref.: #30881]	ribitol ChEBI	+	carbon source
[Ref.: #30881]	ribose ChEBI	+	carbon source
[Ref.: #30881]	sorbitol ChEBI	+	carbon source
[Ref.: #30881]	sucrose ChEBI	+	carbon source
[Ref.: #30881]	trehalose ChEBI	+	carbon source
[Ref.: #30881]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20252]	Sample type/isolated from	arid soil from a palm grove
[Ref.: #20252]	Geographic location (country and/or sea, region)	Sahara, Mzab region, Ghardaia, Ntissa palm grove (Béni-isguen), 32° 29' N 3° 41' E
[Ref.: #20252]	Country	Algeria
[Ref.: #20252]	Country ISO 3 Code	DZA
[Ref.: #20252]	Continent	Africa
[Ref.: #20252]	Geographic location	32.4833°/3.6833°

[Ref.: #62916]	Sample type/isolated from	Soil,Sahara desert
[Ref.: #62916]	Sampling date	2006
[Ref.: #62916]	Geographic location (country and/or sea, region)	Chardaia,Mzab region
[Ref.: #62916]	Country	Algeria
[Ref.: #62916]	Country ISO 3 Code	DZA
[Ref.: #62916]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Climate	#Hot	#Arid

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ918202 (>99% sequence identity) for Actinopolyspora mzabensis from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples
Plant Samples
Total Samples	1

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20252]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20252]	Actinopolyspora mzabensis strain H55 16S ribosomal RNA gene, partial sequence	HQ918202	1530	GenBank ENA	995066 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinopolyspora mzabensis DSM 45460	GCA_900101095	scaffold	GenBank ENA	995066 tax ID	*
[Ref.: #66792]	Actinopolyspora mzabensis strain DSM 45460	995066.3	wgs	PATRIC	995066 tax ID	*
[Ref.: #66792]	Actinopolyspora mzabensis DSM 45460	2619619027	draft	JGI IMG/M	995066 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinopolyspora mzabensis DSM 45460 NCBI: GCA_900101095.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinopolyspora mzabensis DSM 45460 NCBI: GCA_900101095.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.293	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.246	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.765	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	85.026	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.05	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91	yes

Availability in culture collections External links

[Ref.: #20252]

Culture collection no.

DSM 45460, CCUG 62965

[Ref.: #88558]

SI-ID 402809

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinopolyspora mzabensis sp. nov., a halophilic actinomycete isolated from an Algerian Saharan soil.	Meklat A, Bouras N, Zitouni A, Mathieu F, Lebrihi A, Schumann P, Sproer C, Klenk HP, Sabaou N	Int J Syst Evol Microbiol	10.1099/ijs.0.046649-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20252

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45460

#30881

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27211 (see below)

#62916 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62965

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88558

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402809.1 )

#27211

IJSEM 3787 2013 ( DOI 10.1099/ijs.0.046649-0 , PubMed 23667146 )

* These data were automatically processed and therefore are not curated

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Actinopolyspora mzabensis DSM 45460

Actinopolyspora mzabensis DSM 45460

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