Name: Thalassospira povalilytica DSM 26719
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24533

Type strain:

Species: Thalassospira povalilytica

Culture col. no.: DSM 26719, JCM 18746, Zumi 95

Strain history: Y. Nogi strain Zumi 95.

NCBI tax ID(s): 732237 (species)

SI-ID 404675

DSM 26719

Section

Thalassospira povalilytica DSM 26719 is a mesophilic bacterium that was isolated from drift plastic rope litter from a rocky shore.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Thalassospiraceae*
	Genus	*Thalassospira*
	Species	**Thalassospira povalilytica**
	Full Scientific Name (LPSN)	Thalassospira povalilytica Nogi et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20865]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #20865]

Culture medium growth

[Ref.: #20865]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20865]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20865]			growth	25 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #20865]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20865]	Sample type/isolated from	drift plastic rope litter from a rocky shore
[Ref.: #20865]	Geographic location (country and/or sea, region)	Tokyo Bay (35° 17.1' N 139° 41.4' E)
[Ref.: #20865]	Country	Japan
[Ref.: #20865]	Country ISO 3 Code	JPN
[Ref.: #20865]	Continent	Asia
[Ref.: #20865]	Geographic location	35.2850°/139.6900°

[Ref.: #67770]	Sample type/isolated from	Plastic rope litter found in Tokyo Bay
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Engineered	#Waste	#Solid waste
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB548215 (>99% sequence identity) for Thalassospira from Microbeatlas

Aquatic Samples	7649
Soil Samples	540
Animal Samples	378
Plant Samples	159
Total Samples	8726

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20865]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20865]	Thalassospira povalilytica gene for 16S rRNA, partial sequence	AB548215	1452	ENA	732237 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thalassospira povalilytica Zumi 95	GCA_002844235	contig	GenBank	732237 tax ID

[Ref.: #20865]

GC-content

55.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thalassospira povalilytica Zumi 95 NCBI: GCA_002844235.1
[Ref.: #69480]	flagellated	yes	83.076	no
[Ref.: #69480]	gram-positive	no	98.931	no
[Ref.: #69480]	anaerobic	no	97.935	no
[Ref.: #69480]	aerobic	yes	78.831	no
[Ref.: #69480]	halophile	no	50	no
[Ref.: #69480]	spore-forming	no	94.014	no
[Ref.: #69480]	glucose-util	yes	92.417	no
[Ref.: #69480]	thermophile	no	97.353	no
[Ref.: #69480]	motile	yes	92.599	no
[Ref.: #69480]	glucose-ferment	no	85.56	no

Availability in culture collections External links

[Ref.: #20865]

Culture collection no.

DSM 26719, JCM 18746, Zumi 95

[Ref.: #88388]

SI-ID 404675

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thalassospira povalilytica sp. nov., a polyvinyl-alcohol-degrading marine bacterium.	Nogi Y, Yoshizumi M, Miyazaki M	Int J Syst Evol Microbiol	10.1099/ijs.0.058321-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20865

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26719

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88388

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404675.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Thalassospira povalilytica in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Thalassospira povalilytica Zumi 95

Change proposal

Change proposal