Strain identifier
BacDive ID: 24533
Type strain: 
Species: Thalassospira povalilytica
Strain history: Y. Nogi strain Zumi 95.
NCBI tax ID(s): 732237 (species)
version 9.1 (current version)
General
@ref: 20865
BacDive-ID: 24533
DSM-Number: 26719
keywords: genome sequence, 16S sequence, Bacteria, motile
description: Thalassospira povalilytica DSM 26719 is a motile bacterium that was isolated from drift plastic rope litter from a rocky shore.
NCBI tax id
- NCBI tax id: 732237
- Matching level: species
strain history
| @ref | history |
|---|---|
| 20865 | <- Y. Nogi, Japan Agency for Marine-Earth Sci. and Technol. (JAMSTEC), Extremobiosphere Res. Center, Yokosuka; Zumi 95 |
| 67770 | Y. Nogi strain Zumi 95. |
doi: 10.13145/bacdive24533.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Thalassospiraceae
- genus: Thalassospira
- species: Thalassospira povalilytica
- full scientific name: Thalassospira povalilytica Nogi et al. 2014
@ref: 20865
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Thalassospiraceae
genus: Thalassospira
species: Thalassospira povalilytica
full scientific name: Thalassospira povalilytica Nogi et al. 2014
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99
Culture and growth conditions
culture medium
- @ref: 20865
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 20865 | positive | growth | 25 |
| 67770 | positive | growth | 25 |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 20865 | drift plastic rope litter from a rocky shore | Tokyo Bay (35° 17.1' N 139° 41.4' E) | Japan | JPN | Asia | 35.285 | 139.69 |
| 67770 | Plastic rope litter found in Tokyo Bay | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Engineered product |
| #Engineered | #Waste | #Solid waste |
| #Environmental | #Terrestrial | #Coast |
taxonmaps
- @ref: 69479
- File name: preview.99_884.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_88;96_222;97_242;98_271;99_884&stattab=map
- Last taxonomy: Thalassospira
- 16S sequence: AB548215
- Sequence Identity:
- Total samples: 8726
- soil counts: 540
- aquatic counts: 7649
- animal counts: 378
- plant counts: 159
Safety information
risk assessment
- @ref: 20865
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20865
- description: Thalassospira povalilytica gene for 16S rRNA, partial sequence
- accession: AB548215
- length: 1452
- database: nuccore
- NCBI tax ID: 732237
Genome sequences
- @ref: 67770
- description: Thalassospira povalilytica Zumi 95
- accession: GCA_002844235
- assembly level: contig
- database: ncbi
- NCBI tax ID: 732237
GC content
- @ref: 20865
- GC-content: 55.1
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.094 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 70.262 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.515 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.294 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 85.425 | no |
External links
@ref: 20865
culture collection no.: DSM 26719, JCM 18746, Zumi 95
straininfo link
- @ref: 88388
- straininfo: 404675
literature
- topic: Phylogeny
- Pubmed-ID: 24408523
- title: Thalassospira povalilytica sp. nov., a polyvinyl-alcohol-degrading marine bacterium.
- authors: Nogi Y, Yoshizumi M, Miyazaki M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.058321-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, Bays/microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Polyvinyl Alcohol/*metabolism, RNA, Ribosomal, 16S/genetics, Rhodospirillaceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, Water Pollutants, Chemical/metabolism
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20865 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26719 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26719) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 88388 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404675.1 |