Streptomonospora nanhaiensis 12A09 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from marine sediment.
spore-forming Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Streptosporangiales |
| Family Nocardiopsidaceae |
| Genus Streptomonospora |
| Species Streptomonospora nanhaiensis |
| Full scientific name Streptomonospora nanhaiensis Zhang et al. 2013 |
| Synonyms (1) |
| 31121 | Productionyes |
| @ref: | 20842 |
| multimedia content: | DSM_45927.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_45927.jpg |
| caption: | Medium 987 + 25g/l sea salt 37°C |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 20842 | ISP2 MEDIUM (DSMZ Medium 987) | Medium recipe at MediaDive | Name: ISP 2 MEDIUM (DSMZ Medium 987; with strain-specific modifications) Composition: Sea Salt 25.0 g/l Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water | ||
| 20842 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | Medium recipe at MediaDive | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water | ||
| 20842 | CZAPEK PEPTONE AGAR (DSMZ Medium 83) | Medium recipe at MediaDive | Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water |
| 31121 | Spore formationyes |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 31121 | 29016 ChEBI | arginine | + | carbon source | |
| 31121 | 35391 ChEBI | aspartate | + | carbon source | |
| 31121 | 16296 ChEBI | D-tryptophan | + | carbon source | |
| 31121 | 29987 ChEBI | glutamate | + | carbon source | |
| 31121 | 27570 ChEBI | histidine | + | carbon source | |
| 31121 | 17632 ChEBI | nitrate | + | reduction | |
| 31121 | 28044 ChEBI | phenylalanine | + | carbon source | |
| 31121 | 26986 ChEBI | threonine | + | carbon source |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Latitude | Longitude | |
|---|---|---|---|---|---|---|---|---|
| 20842 | marine sediment | South China Sea (119° 19.896' E 19° 41.569' N) | China | CHN | Asia | 19.6927 | 119.332 19.6927/119.332 |
Global distribution of 16S sequence KC768774 (>99% sequence identity) for Streptomonospora from Microbeatlas ![]()
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 20842 | 1 | Risk group (German classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM2664225v1 assembly for Streptomonospora nanhaiensis 12A09 | complete | 1323731 | 97.36 | ||||
| 66792 | ASM1341056v1 assembly for Streptomonospora nanhaiensis DSM 45927 | contig | 1323731 | 75.21 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20842 | Streptomonospora nanhaiensis strain 12A09 16S ribosomal RNA gene, partial sequence | KC768774 | 1535 | 1323731 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 98.04 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 94.10 | no |
| 125439 | motility | BacteriaNetⓘ | no | 90.07 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 77.87 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 92.02 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 97.14 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 91.44 | yes |
| 125438 | spore-forming | spore-formingⓘ | yes | 87.36 | no |
| 125438 | thermophilic | thermophileⓘ | no | 92.61 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 92.00 | yes |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Streptomonospora halotolerans sp. nov., an actinomycete isolated from soil. | Zhao J, Guo L, Liu C, Sun P, Li J, Li W, Xiang W, Wang X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000397 | 2015 | |
| Phylogeny | Description of Streptomonospora sediminis sp. nov. and Streptomonospora nanhaiensis sp. nov., and reclassification of Nocardiopsis arabia Hozzein & Goodfellow 2008 as Streptomonospora arabica comb. nov. and emended description of the genus Streptomonospora. | Zhang DF, Pan HQ, He J, Zhang XM, Zhang YG, Klenk HP, Hu JC, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.052704-0 | 2013 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20842 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45927 |
| #27450 | IJSEM 4447 2013 ( DOI 10.1099/ijs.0.052704-0 , PubMed 23847283 ) |
| #31121 | Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27450 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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