Name: Streptomonospora nanhaiensis 12A09
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24259

Type strain:

Species: Streptomonospora nanhaiensis

Strain Designation: 12A09

Culture col. no.: DSM 45927, CCTCC AB 2013140, KCTC 29145

Strain history: <- KCTC; KCTC 29145 <- D.-F. Zhang

NCBI tax ID(s): 1323731 (species)

SI-ID 400754

DSM 45927

Special Collections

Section

Streptomonospora nanhaiensis 12A09 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from marine sediment.

Gram-positive
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Nocardiopsidaceae*
	Genus	*Streptomonospora*
	Species	**Streptomonospora nanhaiensis**
	Full Scientific Name (LPSN)	Streptomonospora nanhaiensis Zhang et al. 2013

Synonym

Streptomonospora halotolerans

Information on morphological and physiological properties Morphology

[Ref.: #31121]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %92.016

[Ref.: #31121]	Cell shape	rod-shaped

[Ref.: #31121]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92

[Ref.: #31121]

Pigment production

yes

Multimedia content

[Ref.: #20842]

Caption:

Medium 987 + 25g/l sea salt 37°C

[Ref.: #20842]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20842]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #20842]

Culture medium growth

[Ref.: #20842]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20842]

Culture medium composition

expand / minimize

[Ref.: #20842]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #20842]

Culture medium growth

[Ref.: #20842]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20842]

Culture medium composition

expand / minimize

[Ref.: #20842]

Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

[Ref.: #20842]

Culture medium growth

[Ref.: #20842]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20842]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20842]	growth	37 °C
[Ref.: #31121]	growth	10-50 °C
[Ref.: #31121]	optimum	37 °C

	pH	Kind of pH		pH
[Ref.: #31121]			optimum	7.5
[Ref.: #31121]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31121]	Oxygen tolerance	aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %91.443

[Ref.: #31121]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %96

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31121]		NaCl		growth	0-20	%
[Ref.: #31121]		NaCl		optimum	3.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31121]	arginine ChEBI	+	carbon source
[Ref.: #31121]	aspartate ChEBI	+	carbon source
[Ref.: #31121]	D-tryptophan ChEBI	+	carbon source
[Ref.: #31121]	glutamate ChEBI	+	carbon source
[Ref.: #31121]	histidine ChEBI	+	carbon source
[Ref.: #31121]	nitrate ChEBI	+	reduction
[Ref.: #31121]	phenylalanine ChEBI	+	carbon source
[Ref.: #31121]	threonine ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31121]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20842]	Sample type/isolated from	marine sediment
[Ref.: #20842]	Geographic location (country and/or sea, region)	South China Sea (119° 19.896' E 19° 41.569' N)
[Ref.: #20842]	Country	China
[Ref.: #20842]	Country ISO 3 Code	CHN
[Ref.: #20842]	Continent	Asia
[Ref.: #20842]	Geographic location	19.6927°/119.3320°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC768774 (>99% sequence identity) for Streptomonospora from Microbeatlas

Aquatic Samples	2
Soil Samples	20
Animal Samples	16
Plant Samples	5
Total Samples	43

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20842]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20842]	Streptomonospora nanhaiensis strain 12A09 16S ribosomal RNA gene, partial sequence	KC768774	1535	GenBank ENA	1323731 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomonospora nanhaiensis DSM 45927	GCA_013410565	contig	GenBank ENA	1323731 tax ID	*
[Ref.: #66792]	Streptomonospora nanhaiensis strain DSM 45927	1323731.3	wgs	PATRIC	1323731 tax ID	*
[Ref.: #66792]	Streptomonospora nanhaiensis DSM 45927	2856464816	draft	JGI IMG/M	1323731 tax ID	*
[Ref.: #66792]	Streptomonospora nanhaiensis 12A09	GCA_026642255	complete	GenBank ENA	1323731 tax ID	*

[Ref.: #20842]	GC-content	74.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31121]	GC-content	74.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomonospora nanhaiensis strain DSM 45927 PATRIC: 1323731.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	96	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomonospora nanhaiensis 12A09 NCBI: GCA_026642255.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.016	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.139	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.443	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	87.355	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.614	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92	yes

Availability in culture collections External links

[Ref.: #20842]

Culture collection no.

DSM 45927, CCTCC AB 2013140, KCTC 29145

[Ref.: #88201]

SI-ID 400754

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomonospora halotolerans sp. nov., an actinomycete isolated from soil.	Zhao J, Guo L, Liu C, Sun P, Li J, Li W, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.000397	2015	*
Phylogeny	Description of Streptomonospora sediminis sp. nov. and Streptomonospora nanhaiensis sp. nov., and reclassification of Nocardiopsis arabia Hozzein & Goodfellow 2008 as Streptomonospora arabica comb. nov. and emended description of the genus Streptomonospora.	Zhang DF, Pan HQ, He J, Zhang XM, Zhang YG, Klenk HP, Hu JC, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.052704-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20842

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45927

#31121

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27450 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88201

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400754.1 )

#27450

IJSEM 4447 2013 ( DOI 10.1099/ijs.0.052704-0 , PubMed 23847283 )

* These data were automatically processed and therefore are not curated

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Streptomonospora nanhaiensis strain DSM 45927

Streptomonospora nanhaiensis 12A09

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