Strain identifier

BacDive ID: 24259

Type strain: Yes

Species: Streptomonospora nanhaiensis

Strain Designation: 12A09

Strain history: <- KCTC; KCTC 29145 <- D.-F. Zhang

NCBI tax ID(s): 1323731 (species)

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General

@ref: 20842

BacDive-ID: 24259

DSM-Number: 45927

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Streptomonospora nanhaiensis 12A09 is an aerobe, spore-forming, mesophilic bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1323731
  • Matching level: species

strain history

  • @ref: 20842
  • history: <- KCTC; KCTC 29145 <- D.-F. Zhang

doi: 10.13145/bacdive24259.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Nocardiopsidaceae
  • genus: Streptomonospora
  • species: Streptomonospora nanhaiensis
  • full scientific name: Streptomonospora nanhaiensis Zhang et al. 2013

  • synonyms

    • @ref: 20215
    • synonym: Streptomonospora halotolerans

@ref: 20842

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiopsaceae

genus: Streptomonospora

species: Streptomonospora nanhaiensis

full scientific name: Streptomonospora nanhaiensis Zhang et al. 2013

strain designation: 12A09

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
31121positiverod-shapedno
69480positive100

pigmentation

  • @ref: 31121
  • production: yes

multimedia

  • @ref: 20842
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45927.jpg
  • caption: Medium 987 + 25g/l sea salt 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20842ISP2 MEDIUM (DSMZ Medium 987)yeshttps://mediadive.dsmz.de/medium/987Name: ISP 2 MEDIUM (DSMZ Medium 987; with strain-specific modifications) Composition: Sea Salt 25.0 g/l Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water
20842BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
20842CZAPEK PEPTONE AGAR (DSMZ Medium 83)yeshttps://mediadive.dsmz.de/medium/83Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
20842positivegrowth37mesophilic
31121positivegrowth10-50
31121positiveoptimum37mesophilic

culture pH

@refabilitytypepHPH range
31121positivegrowth6.0-9.0alkaliphile
31121positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31121
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
31121yes
69481yes96
69480yes100

halophily

@refsaltgrowthtested relationconcentration
31121NaClpositivegrowth0-20 %
31121NaClpositiveoptimum3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3112129016arginine+carbon source
3112135391aspartate+carbon source
3112129987glutamate+carbon source
3112127570histidine+carbon source
3112128044phenylalanine+carbon source
3112126986threonine+carbon source
3112116296D-tryptophan+carbon source
3112117632nitrate+reduction

enzymes

  • @ref: 31121
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

  • @ref: 20842
  • sample type: marine sediment
  • geographic location: South China Sea (119° 19.896' E 19° 41.569' N)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 19.6927
  • longitude: 119.332

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_43836.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_152;96_2754;97_25089;98_31812;99_43836&stattab=map
  • Last taxonomy: Streptomonospora
  • 16S sequence: KC768774
  • Sequence Identity:
  • Total samples: 43
  • soil counts: 20
  • aquatic counts: 2
  • animal counts: 16
  • plant counts: 5

Safety information

risk assessment

  • @ref: 20842
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20842
  • description: Streptomonospora nanhaiensis strain 12A09 16S ribosomal RNA gene, partial sequence
  • accession: KC768774
  • length: 1535
  • database: ena
  • NCBI tax ID: 1323731

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomonospora nanhaiensis DSM 45927GCA_013410565contigncbi1323731
66792Streptomonospora nanhaiensis strain DSM 459271323731.3wgspatric1323731
66792Streptomonospora nanhaiensis DSM 459272856464816draftimg1323731
66792Streptomonospora nanhaiensis 12A09GCA_026642255completencbi1323731

GC content

@refGC-contentmethod
2084274.4high performance liquid chromatography (HPLC)
3112174.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes96no
motileno92.412yes
flagellatedno97.348yes
gram-positiveyes91.473no
anaerobicno99.298yes
aerobicyes95.956yes
halophileyes69.618no
spore-formingyes92.99no
glucose-fermentno89.322no
thermophileno98.208yes
glucose-utilyes89.217no

External links

@ref: 20842

culture collection no.: DSM 45927, CCTCC AB 2013140, KCTC 29145

straininfo link

  • @ref: 88201
  • straininfo: 400754

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23847283Description of Streptomonospora sediminis sp. nov. and Streptomonospora nanhaiensis sp. nov., and reclassification of Nocardiopsis arabia Hozzein & Goodfellow 2008 as Streptomonospora arabica comb. nov. and emended description of the genus Streptomonospora.Zhang DF, Pan HQ, He J, Zhang XM, Zhang YG, Klenk HP, Hu JC, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.052704-02013Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Indian Ocean, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Vitamin K 2/chemistryGenetics
Phylogeny26297597Streptomonospora halotolerans sp. nov., an actinomycete isolated from soil.Zhao J, Guo L, Liu C, Sun P, Li J, Li W, Xiang W, Wang XInt J Syst Evol Microbiol10.1099/ijsem.0.0003972015Actinobacteria/genetics, *Actinomycetales/classification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization/genetics, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil MicrobiologyGenetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20842Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45927Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45927)
31121Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172745028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88201Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400754.1