Name: Nocardiopsis fildesensis GW9-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24258

Type strain:

Species: Nocardiopsis fildesensis

Strain Designation: GW9-2

Culture col. no.: DSM 45699, CGMCC 4.7023, NRRL B-24873, JCM 30781

Strain history: CGMCC 4.7023 <-- S. Xu et al.; Ocean Univ. of China, China; GW9-2.

NCBI tax ID(s): 639240 (species)

SI-ID 404491

DSM 45699

Special Collections

Section

Nocardiopsis fildesensis GW9-2 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

Gram-positive
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Nocardiopsidaceae*
	Genus	*Nocardiopsis*
	Species	**Nocardiopsis fildesensis**
	Full Scientific Name (LPSN)	Nocardiopsis fildesensis Xu et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #31148]	Gram stain	positive

[Ref.: #31148]	Cell shape	rod-shaped

[Ref.: #31148]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20689]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #20689]

Culture medium growth

[Ref.: #20689]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20689]

Culture medium composition

expand / minimize

[Ref.: #20689]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #20689]

Culture medium growth

[Ref.: #20689]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20689]

Culture medium composition

expand / minimize

[Ref.: #20689]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #20689]

Culture medium growth

[Ref.: #20689]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20689]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20689]	growth	28 °C
[Ref.: #31148]	growth	16-37 °C
[Ref.: #31148]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #31148]			optimum	9
[Ref.: #31148]			growth	05-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31148]

Oxygen tolerance

aerobe

[Ref.: #31148]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31148]		NaCl		growth	0-12	%
[Ref.: #31148]		NaCl		optimum	02-04	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31148]	fructose ChEBI	+	carbon source
[Ref.: #31148]	galactose ChEBI	+	carbon source
[Ref.: #31148]	glucose ChEBI	+	carbon source
[Ref.: #31148]	glycerol ChEBI	+	carbon source
[Ref.: #31148]	glycogen ChEBI	+	carbon source
[Ref.: #31148]	mannitol ChEBI	+	carbon source
[Ref.: #31148]	mannose ChEBI	+	carbon source
[Ref.: #31148]	nitrate ChEBI	+	reduction
[Ref.: #31148]	tween 40 ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20689]	Sample type/isolated from	soil
[Ref.: #20689]	Geographic location (country and/or sea, region)	King George Island, west coast of the Fildes Peninsula near the Chinese Antarctic Great Wall Station
[Ref.: #20689]	Country	China
[Ref.: #20689]	Country ISO 3 Code	CHN
[Ref.: #20689]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from the Fildes Peninsula
[Ref.: #67770]	Geographic location (country and/or sea, region)	King George Island
[Ref.: #67770]	Country	Antarctica
[Ref.: #67770]	Country ISO 3 Code	ATA
[Ref.: #67770]	Continent	Antarctica
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ853144 (>99% sequence identity) for Nocardiopsis from Microbeatlas

Aquatic Samples	41
Soil Samples	167
Animal Samples	187
Plant Samples	23
Total Samples	418

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20689]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20689]	Nocardiopsis fildesensis strain GW9-2 16S ribosomal RNA gene, partial sequence	FJ853144	1458	GenBank ENA	639240 tax ID

[Ref.: #20689]	GC-content	76.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #31148]	GC-content	76.8 mol%

Availability in culture collections External links

[Ref.: #20689]

Culture collection no.

DSM 45699, CGMCC 4.7023, NRRL B-24873, JCM 30781

[Ref.: #88200]

SI-ID 404491

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardiopsis fildesensis sp. nov., an actinomycete isolated from soil.	Xu S, Yan L, Zhang X, Wang C, Feng G, Li J	Int J Syst Evol Microbiol	10.1099/ijs.0.053595-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20689

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45699

#31148

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27476 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88200

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404491.1 )

#27476

IJSEM 174 2014 ( DOI 10.1099/ijs.0.053595-0 , PubMed 24048863 )

* These data were automatically processed and therefore are not curated

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