Kribbella albertanoniae (DSM 26744, JCM 30547, NRRL B-24917)

Name: Kribbella albertanoniae (DSM 26744, JCM 30547, NRRL B-24917)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24247

Type strain

Culture col. no. DSM 26744 JCM 30547 NRRL B-24917 BC 640

NCBI tax ID(s) 1266829

Special Collections DSMZ JCM Literature strains

Links

Kribbella albertanoniae DSM 26744 is a mesophilic, Gram-positive prokaryote that was isolated from biofilm on rock.

Gram-positive mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 407593

JCM 30547,DSM 26744

@ref 20215

Last LPSN update 2025-12-16 09:52:49

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Kribbellaceae

Genus Kribbella

Species Kribbella albertanoniae

Full scientific name Kribbella albertanoniae Everest et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Confidence
31034	positive
125439	positive	99.6
125439		92.8

Colony morphology

20624

Incubation period3-7 days

Pigmentation

31034

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20624	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
20624	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20624	positive	growth	28	mesophilic
31034	positive	growth	20-45
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31034	positive	optimum	7
31034	positive	growth	4.3-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31034	NaCl	positive	optimum	2 %

Murein

@ref	Murein short key	Type
20624	A41.01	A3gamma LL-Dpm-Gly

Observation

67770

Observationquinones: MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31034	30089 ChEBI	acetate	+	carbon source
31034	22599 ChEBI	arabinose	+	carbon source
31034	29016 ChEBI	arginine	+	carbon source
31034	22653 ChEBI	asparagine	+	carbon source
31034	17057 ChEBI	cellobiose	+	carbon source
31034	16947 ChEBI	citrate	+	carbon source
31034	4853 ChEBI	esculin	+	hydrolysis
31034	28757 ChEBI	fructose	+	carbon source
31034	17234 ChEBI	glucose	+	carbon source
31034	27570 ChEBI	histidine	+	carbon source
31034	17716 ChEBI	lactose	+	carbon source
31034	29864 ChEBI	mannitol	+	carbon source
31034	37684 ChEBI	mannose	+	carbon source
31034	28053 ChEBI	melibiose	+	carbon source
31034	17268 ChEBI	myo-inositol	+	carbon source
31034	28044 ChEBI	phenylalanine	+	carbon source
31034	16634 ChEBI	raffinose	+	carbon source
31034	26546 ChEBI	rhamnose	+	carbon source
31034	15963 ChEBI	ribitol	+	carbon source
31034	17814 ChEBI	salicin	+	carbon source
31034	17822 ChEBI	serine	+	carbon source
31034	17992 ChEBI	sucrose	+	carbon source
31034	26986 ChEBI	threonine	+	carbon source
31034	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
31034	catalase	+	1.11.1.6
31034	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Biofilm	-
#Environmental	#Terrestrial	#Geologic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20624	biofilm on rock	Rome, Saint Callistus catacomb	Italy	ITA	Europe
67770	St. Callistus catacomb	Rome	Italy	ITA	Europe

Taxonmaps

69479

Global distribution of 16S sequence KC283016 (>99% sequence identity) for Kribbella from Microbeatlas

Aquatic Samples	101
Soil Samples	2798
Animal Samples	158
Plant Samples	531
Total Samples	3588

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20624	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
67770	ASM434845v1 assembly for Kribbella albertanoniae JCM 30547	contig	GCA_004348455	1266829.3	2866673921	1266829

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20624	Kribbella albertanoniae strain BC640 16S ribosomal RNA gene, partial sequence	KC283016	1465		1266829

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Kribbella albertanoniae JCM 30547
NCBI: GCA_004348455

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	88.80	no
125439	motility	BacteriaNetⓘ	no	92.80	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Kribbella albertanoniae strain JCM 30547
PATRIC: 1266829.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.17	yes
125438	anaerobic	anaerobicⓘ	no	96.39	no
125438	spore-forming	spore-formingⓘ	yes	81.34	no
125438	aerobic	aerobicⓘ	yes	87.04	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	no	86.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kribbella turkmenica sp. nov., isolated from the Karakum Desert.	Saygin H, Ay H, Guven K, Sahin N	Int J Syst Evol Microbiol	10.1099/ijsem.0.003538	2019
Phylogeny	Kribbella pittospori sp. nov., an endophytic actinobacterium isolated from the surface-sterilized stem of an Australian native apricot tree, Pittosporum angustifolium.	Kaewkla O, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001023	2016
Phylogeny	Kribbella albertanoniae sp. nov., isolated from a Roman catacomb, and emended description of the genus Kribbella.	Everest GJ, Curtis SM, De Leo F, Urzi C, Meyers PR	Int J Syst Evol Microbiol	10.1099/ijs.0.050237-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20624	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26744
#27364	IJSEM 3591 2013 ( DOI 10.1099/ijs.0.050237-0 , PubMed 23584288 )
#31034	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27364
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Kribbella albertanoniae (DSM 26744, JCM 30547, NRRL B-24917)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Murein

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004348455

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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