Name: Kribbella albertanoniae DSM 26744
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24247

Type strain:

Species: Kribbella albertanoniae

Culture col. no.: DSM 26744, JCM 30547, NRRL B-24917, BC 640

Strain history: DSM 26744 <-- P. Meyers; Univ. Cape Town, South Africa; BC640 <-- C. Urzì; Univ. Messina, Italy.

NCBI tax ID(s): 1266829 (species)

SI-ID 407593

DSM 26744

Special Collections

Section

Kribbella albertanoniae DSM 26744 is a spore-forming, Gram-positive bacterium that was isolated from biofilm on rock.

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Kribbellaceae*
	Genus	*Kribbella*
	Species	**Kribbella albertanoniae**
	Full Scientific Name (LPSN)	Kribbella albertanoniae Everest et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31034]	Gram stain	positive

[Ref.: #31034]	Motility	no

[Ref.: #20624]

Incubation period

3-7 days

[Ref.: #31034]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20624]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #20624]

Culture medium growth

[Ref.: #20624]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #20624]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #20624]

Culture medium growth

[Ref.: #20624]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20624]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20624]	growth	28 °C
[Ref.: #31034]	growth	20-45 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #31034]			optimum	7
[Ref.: #31034]			growth	4.3-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31034]		NaCl		optimum	2	%

[Ref.: #20624]	Murein short key	A41.01
[Ref.: #20624]	Murein types	A3gamma LL-Dpm-Gly

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31034]	acetate ChEBI	+	carbon source
[Ref.: #31034]	arabinose ChEBI	+	carbon source
[Ref.: #31034]	arginine ChEBI	+	carbon source
[Ref.: #31034]	asparagine ChEBI	+	carbon source
[Ref.: #31034]	cellobiose ChEBI	+	carbon source
[Ref.: #31034]	citrate ChEBI	+	carbon source
[Ref.: #31034]	esculin ChEBI	+	hydrolysis
[Ref.: #31034]	fructose ChEBI	+	carbon source
[Ref.: #31034]	glucose ChEBI	+	carbon source
[Ref.: #31034]	histidine ChEBI	+	carbon source
[Ref.: #31034]	lactose ChEBI	+	carbon source
[Ref.: #31034]	mannitol ChEBI	+	carbon source
[Ref.: #31034]	mannose ChEBI	+	carbon source
[Ref.: #31034]	melibiose ChEBI	+	carbon source
[Ref.: #31034]	myo-inositol ChEBI	+	carbon source
[Ref.: #31034]	phenylalanine ChEBI	+	carbon source
[Ref.: #31034]	raffinose ChEBI	+	carbon source
[Ref.: #31034]	rhamnose ChEBI	+	carbon source
[Ref.: #31034]	ribitol ChEBI	+	carbon source
[Ref.: #31034]	salicin ChEBI	+	carbon source
[Ref.: #31034]	serine ChEBI	+	carbon source
[Ref.: #31034]	sucrose ChEBI	+	carbon source
[Ref.: #31034]	threonine ChEBI	+	carbon source
[Ref.: #31034]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31034]		catalase	+	1.11.1.6
[Ref.: #31034]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20624]	Sample type/isolated from	biofilm on rock
[Ref.: #20624]	Geographic location (country and/or sea, region)	Rome, Saint Callistus catacomb
[Ref.: #20624]	Country	Italy
[Ref.: #20624]	Country ISO 3 Code	ITA
[Ref.: #20624]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	St. Callistus catacomb
[Ref.: #67770]	Geographic location (country and/or sea, region)	Rome
[Ref.: #67770]	Country	Italy
[Ref.: #67770]	Country ISO 3 Code	ITA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Biofilm	-
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC283016 (>99% sequence identity) for Kribbella from Microbeatlas

Aquatic Samples	101
Soil Samples	2798
Animal Samples	158
Plant Samples	531
Total Samples	3588

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20624]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20624]	Kribbella albertanoniae strain BC640 16S ribosomal RNA gene, partial sequence	KC283016	1465	GenBank ENA	1266829 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kribbella albertanoniae JCM 30547	GCA_004348455	contig	GenBank ENA	1266829 tax ID
[Ref.: #66792]	Kribbella albertanoniae strain JCM 30547	1266829.3	wgs	PATRIC	1266829 tax ID	*
[Ref.: #66792]	Kribbella albertanoniae JCM 30547	2866673921	draft	JGI IMG/M	1266829 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kribbella albertanoniae strain JCM 30547 PATRIC: 1266829.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kribbella albertanoniae strain JCM 30547 PATRIC: 1266829.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.17	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.389	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	81.343	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.039	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86	yes

Availability in culture collections External links

[Ref.: #20624]

Culture collection no.

DSM 26744, JCM 30547, NRRL B-24917, BC 640

[Ref.: #88189]

SI-ID 407593

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kribbella turkmenica sp. nov., isolated from the Karakum Desert.	Saygin H, Ay H, Guven K, Sahin N	Int J Syst Evol Microbiol	10.1099/ijsem.0.003538	2019	*
Phylogeny	Kribbella pittospori sp. nov., an endophytic actinobacterium isolated from the surface-sterilized stem of an Australian native apricot tree, Pittosporum angustifolium.	Kaewkla O, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001023	2016	*
Phylogeny	Kribbella albertanoniae sp. nov., isolated from a Roman catacomb, and emended description of the genus Kribbella.	Everest GJ, Curtis SM, De Leo F, Urzi C, Meyers PR	Int J Syst Evol Microbiol	10.1099/ijs.0.050237-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20624

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26744

#31034

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27364 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88189

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407593.1 )

#27364

IJSEM 3591 2013 ( DOI 10.1099/ijs.0.050237-0 , PubMed 23584288 )

* These data were automatically processed and therefore are not curated

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Kribbella albertanoniae strain JCM 30547

Kribbella albertanoniae strain JCM 30547

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