Strain identifier

BacDive ID: 24247

Type strain: Yes

Species: Kribbella albertanoniae

Strain history: DSM 26744 <-- P. Meyers; Univ. Cape Town, South Africa; BC640 <-- C. Urzì; Univ. Messina, Italy.

NCBI tax ID(s): 1266829 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.1 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9.1 (current version)

General

@ref: 20624

BacDive-ID: 24247

DSM-Number: 26744

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, Gram-positive

description: Kribbella albertanoniae DSM 26744 is a spore-forming, Gram-positive bacterium that was isolated from biofilm on rock.

NCBI tax id

  • NCBI tax id: 1266829
  • Matching level: species

strain history

@refhistory
20624<- P. Meyers, Univ. Cape Town, South Africa; BC640 <- C. Urzì, Univ. Messina, Italy
67770DSM 26744 <-- P. Meyers; Univ. Cape Town, South Africa; BC640 <-- C. Urzì; Univ. Messina, Italy.

doi: 10.13145/bacdive24247.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Kribbellaceae
  • genus: Kribbella
  • species: Kribbella albertanoniae
  • full scientific name: Kribbella albertanoniae Everest et al. 2013

@ref: 20624

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Kribbellaceae

genus: Kribbella

species: Kribbella albertanoniae

full scientific name: Kribbella albertanoniae Everest et al. 2013

type strain: yes

Morphology

cell morphology

  • @ref: 31034
  • gram stain: positive
  • motility: no

colony morphology

  • @ref: 20624
  • incubation period: 3-7 days

pigmentation

  • @ref: 31034
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20624R2A MEDIUM (DSMZ Medium 830)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf
20624GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
20624positivegrowth28
31034positivegrowth20-45
67770positivegrowth28

culture pH

@refabilitytypepHPH range
31034positivegrowth4.3-10alkaliphile
31034positiveoptimum7

Physiology and metabolism

spore formation

  • @ref: 69481
  • spore formation: yes
  • confidence: 100

halophily

  • @ref: 31034
  • salt: NaCl
  • growth: positive
  • tested relation: optimum
  • concentration: 2 %

murein

  • @ref: 20624
  • murein short key: A41.01
  • type: A3gamma LL-Dpm-Gly

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3103430089acetate+carbon source
3103415963ribitol+carbon source
3103422599arabinose+carbon source
3103429016arginine+carbon source
3103422653asparagine+carbon source
3103417057cellobiose+carbon source
3103416947citrate+carbon source
3103428757fructose+carbon source
3103417234glucose+carbon source
3103427570histidine+carbon source
3103417716lactose+carbon source
3103429864mannitol+carbon source
3103437684mannose+carbon source
3103428053melibiose+carbon source
3103417268myo-inositol+carbon source
3103428044phenylalanine+carbon source
3103416634raffinose+carbon source
3103426546rhamnose+carbon source
3103417814salicin+carbon source
3103417822serine+carbon source
3103417992sucrose+carbon source
3103426986threonine+carbon source
3103418222xylose+carbon source
310344853esculin+hydrolysis

enzymes

@refvalueactivityec
31034catalase+1.11.1.6
31034gelatinase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20624biofilm on rockRome, Saint Callistus catacombItalyITAEurope
67770St. Callistus catacombRomeItalyITAEurope

isolation source categories

Cat1Cat2Cat3
#Environmental#Biofilm
#Environmental#Terrestrial#Geologic

taxonmaps

  • @ref: 69479
  • File name: preview.99_8461.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_440;97_503;98_578;99_8461&stattab=map
  • Last taxonomy: Kribbella
  • 16S sequence: KC283016
  • Sequence Identity:
  • Total samples: 3588
  • soil counts: 2798
  • aquatic counts: 101
  • animal counts: 158
  • plant counts: 531

Safety information

risk assessment

  • @ref: 20624
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20624
  • description: Kribbella albertanoniae strain BC640 16S ribosomal RNA gene, partial sequence
  • accession: KC283016
  • length: 1465
  • database: nuccore
  • NCBI tax ID: 1266829

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kribbella albertanoniae strain JCM 305471266829.3wgspatric1266829
66792Kribbella albertanoniae JCM 305472866673921draftimg1266829
67770Kribbella albertanoniae JCM 30547GCA_004348455contigncbi1266829

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes87.17yes
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.389no
69480spore-formingspore-formingAbility to form endo- or exosporesyes81.343no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes87.039no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno96.5yes
69480flagellatedmotile2+Ability to perform flagellated movementno86yes

External links

@ref: 20624

culture collection no.: DSM 26744, JCM 30547, NRRL B-24917, BC 640

straininfo link

  • @ref: 88189
  • straininfo: 407593

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23584288Kribbella albertanoniae sp. nov., isolated from a Roman catacomb, and emended description of the genus Kribbella.Everest GJ, Curtis SM, De Leo F, Urzi C, Meyers PRInt J Syst Evol Microbiol10.1099/ijs.0.050237-02013Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Biofilms, DNA, Bacterial/genetics, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rome, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny26978036Kribbella pittospori sp. nov., an endophytic actinobacterium isolated from the surface-sterilized stem of an Australian native apricot tree, Pittosporum angustifolium.Kaewkla O, Franco CMMInt J Syst Evol Microbiol10.1099/ijsem.0.0010232016Actinomycetales/*classification/genetics/isolation & purification, Australia, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Stems/*microbiology, RNA, Ribosomal, 16S/genetics, Rosales/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny31215863Kribbella turkmenica sp. nov., isolated from the Karakum Desert.Saygin H, Ay H, Guven K, Sahin NInt J Syst Evol Microbiol10.1099/ijsem.0.0035382019Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, *Desert Climate, Diaminopimelic Acid/analysis, Fatty Acids/chemistry, Multilocus Sequence Typing, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Turkmenistan, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20624Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26744Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26744)
31034Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172736428776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88189Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407593.1