Mycobacterium avium (DSM 45439, CCUG 56331, CIP 109827)

Name: Mycobacterium avium (DSM 45439, CCUG 56331, CIP 109827)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24234

Type strain

Strain Designation 4355387

Culture col. no. DSM 45439 CCUG 56331 CIP 109827 CSUR P34 JCM 17323 1 more

NCBI tax ID(s) 701041

Special Collections DSMZ CCUG JCM CIP Literature strains

History <- CIP; CIP 109827 <- I. Ben Salah and M. Drancourt, IRD, Marseille; 4355387 2008, M. Drancourt, La Timone Hosp, Marseille, France: strain 4355387

Links

Mycobacterium avium 4355387 is a mesophilic, Gram-positive human pathogen that was isolated from human sputum.

Gram-positive mesophilic human pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 364720

DSM 45439,CCUG 56331,CIP 109827,JCM 17323

@ref 20215

Last LPSN update 2026-02-09 11:23:55

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium avium

Full scientific name Mycobacterium avium Chester 1901 (Approved Lists 1980)

Synonyms (1)

Mycobacterium bouchedurhonense

BacDive ID	Other strains from **Mycobacterium avium** (33)	Type strain
136994	M. avium 27497, CIP 109831
137012	M. avium 68257, CIP 109826
144176	M. avium CCUG 23311
144177	M. avium CCUG 23312
144178	M. avium CCUG 23313
145188	M. avium 140310067, CCUG 27851, ATCC 35767, TMC 1463, ...
145278	M. avium CCUG 28067
145315	M. avium CCUG 28168
145316	M. avium CCUG 28169
145317	M. avium CCUG 28170
145318	M. avium CCUG 28171
145337	M. avium CCUG 28216
161589	M. avium JCM 15429
161590	M. avium JCM 15430
161591	M. avium JCM 15431
161592	M. avium JCM 15432
164713	M. avium JCM 34066
164714	M. avium JCM 34067
164715	M. avium JCM 34068
164716	M. avium JCM 34069
164717	M. avium JCM 34070
164718	M. avium JCM 34071
164719	M. avium JCM 34072
164720	M. avium JCM 34073
164721	M. avium JCM 34074
171125	M. avium 140310064, 11907-300, CRBIP7.138, CIPT 138
171126	M. avium 140310065, 6194, CRBIP7.140, CIPT 140
171127	M. avium 14310068, 25546-759, CRBIP7.143, CIPT 143
171128	M. avium 34540, 14310069, CRBIP7.144, CIPT 144
171129	M. avium STB 42, 140310071, CRBIP7.146, CIPT 146
171130	M. avium Nutson 1784-286, 14310072, CRBIP7.147, CIPT ...
171131	M. avium 1602-1965, 140310073, CRBIP7.148, CIPT 148
171132	M. avium 140310094, CRBIP7.166, CIPT 166

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Confidence
29309	positive	0.87 µm	0.49 µm
125439	positive			97.4

Pigmentation

29309

Productionno

Multimedia

@ref:	20669
multimedia content:	DSM_45439-1.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45439-1.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	20669
multimedia content:	DSM_45439.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45439.jpg
caption:	Medium 645 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20669	MIDDLEBROOK MEDIUM (DSMZ Medium 645)		Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
41220	MEDIUM 93 - for Mycobacterium avium subsp. sylvaticum			Distilled water make up to (900.000 ml);Glycerol (4.500 ml);Middlebrook7H10 agar (17.000 g);Middelbrook OADC enrichment (100.000 ml)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20669	positive	growth	30	mesophilic
41220	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29309	16947 ChEBI	citrate	+	carbon source
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
29309	4853 ChEBI	esculin	+	hydrolysis
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
29309	33942 ChEBI	ribose	+	carbon source
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne

Enzymes

@ref	Value	Activity	Ec
29309	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	-	3.1.3.2	from API zym
29309	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
20669	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20669	-	-	-	+	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
20669	human sputum		Marseille	France	FRA	Europe
60921	Human sputum	2000	Marseille	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence EF591053 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	4789
Soil Samples	12779
Animal Samples	3677
Plant Samples	2833
Total Samples	24078

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
20669			2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2582212v1 assembly for Mycobacterium bouchedurhonense DSM 45439	scaffold	GCA_025822125	701041.5	8115237594	701041	59.52
124043	ASM4265814v1 assembly for Mycobacterium bouchedurhonense CCUG 56331	scaffold	GCA_042658145			701041	48.71
66792	ASM208616v1 assembly for Mycobacterium bouchedurhonense DSM 45439	contig	GCA_002086165	701041.3	8112266377	701041	33.38

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20669	Mycobacterium bouchedurhonense strain 4355387 16S ribosomal RNA gene, partial sequence	EF591053	1498		701041

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycobacterium bouchedurhonense DSM 45439
NCBI: GCA_025822125

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	55.10	no
125439	motility	BacteriaNetⓘ	no	76.00	no
125439	gram_stain	BacteriaNetⓘ	positive	97.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium bouchedurhonense strain DSM 45439
PATRIC: 701041.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.22	no
125438	anaerobic	anaerobicⓘ	no	95.99	no
125438	spore-forming	spore-formingⓘ	no	59.60	no
125438	aerobic	aerobicⓘ	yes	79.52	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	no	86.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative genome analysis of mycobacteria focusing on tRNA and non-coding RNA.	Behra PRK, Pettersson BMF, Ramesh M, Das S, Dasgupta S, Kirsebom LA.	BMC Genomics	10.1186/s12864-022-08927-5	2022
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Microbiological features and clinical relevance of new species of the genus Mycobacterium.	Tortoli E.	Clin Microbiol Rev	10.1128/cmr.00035-14	2014
Phylogeny	Mycobacterium marseillense sp. nov., Mycobacterium timonense sp. nov. and Mycobacterium bouchedurhonense sp. nov., members of the Mycobacterium avium complex.	Ben Salah I, Cayrou C, Raoult D, Drancourt M	Int J Syst Evol Microbiol	10.1099/ijs.0.010637-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20669	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45439
#25722	IJSEM 2803 2009 ( DOI 10.1099/ijs.0.010637-0 , PubMed 19628609 )
#29309	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25722
#41220	; Curators of the CIP;
#60921	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56331
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium avium (DSM 45439, CCUG 56331, CIP 109827)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_025822125

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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