Name: Mycobacterium heraklionense GN01
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24235

Type strain:

Species: Mycobacterium heraklionense

Strain Designation: GN01

Culture col. no.: DSM 46753, CECT 7509, LMG 24735, NCTC 13432, JCM 30995

Strain history: LMG 24735 <-- Z. Gitti; Univ. Hosp. of Heraklion, Greece; GN-1.

NCBI tax ID(s): 512402 (species)

SI-ID 387343

CECT 7509, LMG 24735, NCTC 13432, JCM 30995, DSM 46753, CCUG 75236

Special Collections

Section

Mycobacterium heraklionense GN01 is a coccus-shaped bacterium that was isolated from clinical isolate.

coccus-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium heraklionense**
	Full Scientific Name (LPSN)	Mycobacterium heraklionense Tortoli et al. 2013

Synonym

Mycolicibacter heraklionensis

Information on morphological and physiological properties Morphology

[Ref.: #30561]	Cell shape	coccus-shaped

[Ref.: #69480]	Motility	no Confidence in %90

[Ref.: #30561]

Pigment production

Multimedia content

[Ref.: #20670]

Caption:

Medium 645 37°C

[Ref.: #20670]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20670]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #20670]

Culture medium growth

[Ref.: #20670]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20670]

Culture medium composition

expand / minimize

[Ref.: #20670]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #20670]

Culture medium growth

[Ref.: #20670]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20670]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20670]	growth	37 °C
[Ref.: #30561]	growth	25-37 °C
[Ref.: #30561]	optimum	31 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30561]

Ability of spore formation

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30561]		nitrate ChEBI	+	reduction
[Ref.: #30561]		tween 80 ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30561]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20670]	Sample type/isolated from	clinical isolate
[Ref.: #20670]	Geographic location (country and/or sea, region)	Heraklion
[Ref.: #20670]	Country	Greece
[Ref.: #20670]	Country ISO 3 Code	GRC
[Ref.: #20670]	Continent	Europe
[Ref.: #20670]	Geographic location	35.3418°/25.1483°

[Ref.: #67770]	Sample type/isolated from	Male patient suffering with renal and heart failure
[Ref.: #67770]	Geographic location (country and/or sea, region)	Heraklion
[Ref.: #67770]	Country	Greece
[Ref.: #67770]	Country ISO 3 Code	GRC
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Medical environment	#Clinic
#Infection	#Patient	-
#Infection	#Patient	#Specimen

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU084182 (>99% sequence identity) for Mycolicibacter from Microbeatlas

Aquatic Samples	1264
Soil Samples	1370
Animal Samples	528
Plant Samples	177
Total Samples	3339

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20670]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20670]	Mycobacterium heraklionense strain NCTC 13432 16S ribosomal RNA gene, partial sequence	GU084182	1427	GenBank ENA	512402 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycolicibacter heraklionensis JCM 30995	GCA_019645815	complete	GenBank ENA	512402 tax ID	*
[Ref.: #66792]	Mycolicibacter heraklionensis strain JCM 30995	512402.22	complete	PATRIC	512402 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycobacterium heraklionense JCM 30995 NCBI: GCA_019645815.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	86	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium heraklionense JCM 30995 NCBI: GCA_019645815.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.189	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.535	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.423	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	64.537	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.822	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90	no

Availability in culture collections External links

[Ref.: #20670]

Culture collection no.

DSM 46753, CECT 7509, LMG 24735, NCTC 13432, JCM 30995

[Ref.: #88178]

SI-ID 387343

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Survey of 150 strains belonging to the Mycobacterium terrae complex and description of Mycobacterium engbaekii sp. nov., Mycobacterium heraklionense sp. nov. and Mycobacterium longobardum sp. nov.	Tortoli E, Gitti Z, Klenk HP, Lauria S, Mannino R, Mantegani P, Mariottini A, Neonakis I	Int J Syst Evol Microbiol	10.1099/ijs.0.038737-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20670

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46753

#30561

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26892 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88178

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID387343.1 )

#26892

IJSEM 401 2013 ( DOI 10.1099/ijs.0.038737-0 , PubMed 22447702 )

* These data were automatically processed and therefore are not curated

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Mycobacterium heraklionense JCM 30995

Mycobacterium heraklionense JCM 30995

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