Mycobacterium heraklionense (DSM 46753, CECT 7509, LMG 24735)

Name: Mycobacterium heraklionense (DSM 46753, CECT 7509, LMG 24735)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24235

Type strain

Strain Designation GN01

Culture col. no. DSM 46753 CECT 7509 LMG 24735 NCTC 13432 GN01 1 more

NCBI tax ID(s) 512402

Special Collections DSMZ JCM Literature strains

History <- E. Tortoli, Milano,Italy; GN01 <- Z. Gitti LMG 24735 <-- Z. Gitti; Univ. Hosp. of Heraklion, Greece; GN-1.

Links

Mycobacterium heraklionense GN01 is a mesophilic, coccus-shaped prokaryote that was isolated from clinical isolate.

coccus-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 387343

CT2017-00311,CECT 7509,LMG 24735,NCTC 13432,JCM 30995,DSM 46753,CCUG 75236

@ref 20215

Last LPSN update 2026-02-09 11:23:55

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium heraklionense

Full scientific name Mycobacterium heraklionense Tortoli et al. 2013

Synonyms (1)

Mycolicibacter heraklionensis

Morphology

Cell morphology

@ref	Gram stain	Confidence	Cell shape
30561			coccus-shaped
125439	positive	94.9
125438		90

Pigmentation

30561

Productionno

Multimedia

@ref:	20670
multimedia content:	DSM_46753.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46753.jpg
caption:	Medium 645 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20670	MIDDLEBROOK MEDIUM (DSMZ Medium 645)		Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
20670	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
20670	positive	growth	37	mesophilic
30561	positive	growth	25-37	mesophilic
30561	positive	optimum	31	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.3

Spore formation

30561

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30561	17632 ChEBI	nitrate	+	reduction
30561	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30561	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Medical environment	#Clinic
#Infection	#Patient	-
#Infection	#Patient	#Specimen

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
20670	clinical isolate	Heraklion	Greece	GRC	Europe	35.3418	25.1483 35.3418/25.1483
67770	Male patient suffering with renal and heart failure	Heraklion	Greece	GRC	Europe

Taxonmaps

69479

Global distribution of 16S sequence GU084182 (>99% sequence identity) for Mycolicibacter from Microbeatlas

Aquatic Samples	1264
Soil Samples	1370
Animal Samples	528
Plant Samples	177
Total Samples	3339

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20670	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1964581v1 assembly for Mycolicibacter heraklionensis JCM 30995	complete	GCA_019645815	512402.22	8110261817	512402	97.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20670	Mycobacterium heraklionense strain NCTC 13432 16S ribosomal RNA gene, partial sequence	GU084182	1427		512402

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mycolicibacter heraklionensis strain JCM 30995
PATRIC: 512402.22

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	54.40	no
125439	motility	BacteriaNetⓘ	no	81.20	no
125439	gram_stain	BacteriaNetⓘ	positive	94.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium heraklionense JCM 30995
NCBI: GCA_019645815.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.19	no
125438	anaerobic	anaerobicⓘ	no	93.54	no
125438	aerobic	aerobicⓘ	yes	82.42	no
125438	spore-forming	spore-formingⓘ	no	64.54	yes
125438	thermophilic	thermophileⓘ	no	96.82	no
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
Phylogeny	Microbiological features and clinical relevance of new species of the genus Mycobacterium.	Tortoli E.	Clin Microbiol Rev	10.1128/cmr.00035-14	2014
	Draft Genome Sequence of Mycobacterium heraklionense Strain Davo.	Greninger AL, Cunningham G, Chiu CY, Miller S.	Genome Announc	10.1128/genomea.00807-15	2015
	Complete Genome Sequences of 14 Nontuberculous Mycobacteria Type Strains.	Igarashi Y, Osugi A, Murase Y, Chikamatsu K, Shimomura Y, Hosoya M, Aono A, Morishige Y, Yamada H, Takaki A, Mitarai S.	Microbiol Resour Announc	10.1128/mra.01214-22	2023
Phylogeny	Survey of 150 strains belonging to the Mycobacterium terrae complex and description of Mycobacterium engbaekii sp. nov., Mycobacterium heraklionense sp. nov. and Mycobacterium longobardum sp. nov.	Tortoli E, Gitti Z, Klenk HP, Lauria S, Mannino R, Mantegani P, Mariottini A, Neonakis I	Int J Syst Evol Microbiol	10.1099/ijs.0.038737-0	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20670	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46753
#26892	IJSEM 401 2013 ( DOI 10.1099/ijs.0.038737-0 , PubMed 22447702 )
#30561	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26892
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium heraklionense (DSM 46753, CECT 7509, LMG 24735)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_019645815

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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