Name: Micromonospora jinlongensis NEAU-GRX11
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24215

Type strain:

Species: Micromonospora jinlongensis

Strain Designation: NEAU-GRX11

Culture col. no.: DSM 45876, CGMCC 4.7103

Strain history: <- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-GRX11 <- R. Gao

NCBI tax ID(s): 1287877 (species)

Special Collections

DSMZ

Section

Micromonospora jinlongensis NEAU-GRX11 is a spore-forming, Gram-positive bacterium that was isolated from muddy soil.

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	"Micromonospora jinlongensis"
	Full Scientific Name (LPSN)	Micromonospora jinlongensis Gao et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %93.427

Multimedia content

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Caption:

Medium 554 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20661]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe Confidence in %91.196

[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.824
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20661]	Sample type/isolated from	muddy soil
[Ref.: #20661]	Geographic location (country and/or sea, region)	Heilongjiang Province, Harbin, Jinlong Mountain (45°30'N, 127°06'E)
[Ref.: #20661]	Country	China
[Ref.: #20661]	Country ISO 3 Code	CHN
[Ref.: #20661]	Continent	Asia
[Ref.: #20661]	Geographic location	45.5000°/127.1000°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

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Global distribution of 16S sequence KC134254 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	11
Soil Samples	33
Animal Samples	7
Plant Samples	2
Total Samples	53

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20661]	Micromonospora jinlongensis strain NEAU-GRX11 16S ribosomal RNA gene, partial sequence	KC134254	1507	GenBank ENA	1287877 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Micromonospora jinlongensis DSM 45876	GCA_013410645	contig	GenBank ENA	1287877 tax ID	*
[Ref.: #66792]	Micromonospora jinlongensis strain DSM 45876	1287877.3	wgs	PATRIC	1287877 tax ID	*
[Ref.: #66792]	Micromonospora jinlongensis DSM 45876	2856481432	draft	JGI IMG/M	1287877 tax ID	*

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GC-content

70.04 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micromonospora jinlongensis strain DSM 45876 PATRIC: 1287877.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora jinlongensis strain DSM 45876 PATRIC: 1287877.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	93.427	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.38	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.824	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.196	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.5	no

Availability in culture collections External links

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Culture collection no.

DSM 45876, CGMCC 4.7103

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora zeae sp. nov., a novel endophytic actinomycete isolated from corn root (Zea mays L.).	Shen Y, Zhang Y, Liu C, Wang X, Zhao J, Jia F, Yang L, Yang D, Xiang W	J Antibiot (Tokyo)	10.1038/ja.2014.54	2014	*
Phylogeny	Micromonospora jinlongensis sp. nov., isolated from muddy soil in China and emended description of the genus Micromonospora.	Gao R, Liu C, Zhao J, Jia F, Yu C, Yang L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-013-0074-3	2013	*
Phylogeny	Micromonospora parathelypteridis sp. nov., an endophytic actinomycete with antifungal activity isolated from the root of Parathelypteris beddomei (Bak.) Ching.	Zhao S, Liu C, Zheng W, Ma Z, Cao T, Zhao J, Yan K, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001614	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20661

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45876

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Micromonospora jinlongensis strain DSM 45876

Micromonospora jinlongensis strain DSM 45876

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