Strain identifier
BacDive ID: 24215
Type strain: 
Species: Micromonospora jinlongensis
Strain Designation: NEAU-GRX11
Strain history: <- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-GRX11 <- R. Gao
NCBI tax ID(s): 1287877 (species)
version 8.1 (current version)
General
@ref: 20661
BacDive-ID: 24215
DSM-Number: 45876
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Micromonospora jinlongensis NEAU-GRX11 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from muddy soil.
NCBI tax id
- NCBI tax id: 1287877
- Matching level: species
strain history
- @ref: 20661
- history: <- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-GRX11 <- R. Gao
doi: 10.13145/bacdive24215.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micromonosporales
- family: Micromonosporaceae
- genus: Micromonospora
- species: Micromonospora jinlongensis
- full scientific name: Micromonospora jinlongensis Gao et al. 2014
@ref: 20661
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micromonosporaceae
genus: Micromonospora
species: Micromonospora jinlongensis
full scientific name: Micromonospora jinlongensis Gao et al. 2014
strain designation: NEAU-GRX11
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
multimedia
- @ref: 20661
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45876.jpg
- caption: Medium 554 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 20661 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf | |
| 20661 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf | |
| 20661 | N-Z-AMINE-MEDIUM (DSMZ Medium 554) | yes | https://mediadive.dsmz.de/medium/554 | Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water |
culture temp
- @ref: 20661
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 20661
- sample type: muddy soil
- geographic location: Heilongjiang Province, Harbin, Jinlong Mountain (45°30'N, 127°06'E)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 45.5
- longitude: 127.1
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_10152.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_404;97_1111;98_1509;99_10152&stattab=map
- Last taxonomy: Micromonospora
- 16S sequence: KC134254
- Sequence Identity:
- Total samples: 53
- soil counts: 33
- aquatic counts: 11
- animal counts: 7
- plant counts: 2
Sequence information
16S sequences
- @ref: 20661
- description: Micromonospora jinlongensis strain NEAU-GRX11 16S ribosomal RNA gene, partial sequence
- accession: KC134254
- length: 1507
- database: ena
- NCBI tax ID: 1287877
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Micromonospora jinlongensis DSM 45876 | GCA_013410645 | contig | ncbi | 1287877 |
| 66792 | Micromonospora jinlongensis strain DSM 45876 | 1287877.3 | wgs | patric | 1287877 |
| 66792 | Micromonospora jinlongensis DSM 45876 | 2856481432 | draft | img | 1287877 |
GC content
- @ref: 20661
- GC-content: 70.04
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 92.685 | no |
| gram-positive | yes | 91.938 | no |
| anaerobic | no | 99.4 | no |
| aerobic | yes | 95.844 | no |
| halophile | no | 94.517 | no |
| spore-forming | yes | 94.05 | no |
| glucose-util | yes | 90.306 | no |
| flagellated | no | 98.004 | no |
| thermophile | no | 98.987 | yes |
| glucose-ferment | no | 91.398 | no |
External links
@ref: 20661
culture collection no.: DSM 45876, CGMCC 4.7103
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24257967 | Micromonospora jinlongensis sp. nov., isolated from muddy soil in China and emended description of the genus Micromonospora. | Gao R, Liu C, Zhao J, Jia F, Yu C, Yang L, Wang X, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-013-0074-3 | 2013 | Bacterial Typing Techniques, China, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Micromonospora/*classification/genetics/*isolation & purification/physiology, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
| Phylogeny | 24849538 | Micromonospora zeae sp. nov., a novel endophytic actinomycete isolated from corn root (Zea mays L.). | Shen Y, Zhang Y, Liu C, Wang X, Zhao J, Jia F, Yang L, Yang D, Xiang W | J Antibiot (Tokyo) | 10.1038/ja.2014.54 | 2014 | DNA, Bacterial/*genetics, Micromonospora/genetics/*isolation & purification, Nucleic Acid Hybridization, Phylogeny, Plant Roots, RNA, Ribosomal, 16S/*genetics, Zea mays/*microbiology | Enzymology |
| Phylogeny | 27902235 | Micromonospora parathelypteridis sp. nov., an endophytic actinomycete with antifungal activity isolated from the root of Parathelypteris beddomei (Bak.) Ching. | Zhao S, Liu C, Zheng W, Ma Z, Cao T, Zhao J, Yan K, Xiang W, Wang X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001614 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Micromonospora/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptophyta/*microbiology | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 20661 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45876 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45876) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |