Micromonospora andamanensis (DSM 46721, BCC 45620, NBRC 109075)

Name: Micromonospora andamanensis (DSM 46721, BCC 45620, NBRC 109075)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24216

Type strain

Strain Designation SP03-05

Culture col. no. DSM 46721 BCC 45620 NBRC 109075 SP03-05

NCBI tax ID(s) 1287068

Special Collections DSMZ Literature strains

History <- C Suriyachadkun, BCC; BCC 45620 <- K. Supong

Links

Micromonospora andamanensis SP03-05 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from marine sponge .

spore-forming Gram-positive coccus-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398167

NBRC 109075,DSM 46721

@ref 20215

Last LPSN update 2026-02-09 11:23:55

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora andamanensis

Full scientific name Micromonospora andamanensis (Supong et al. 2013) Nouioui et al. 2018

Synonyms (1)

Verrucosispora andamanensis

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
31057	positive	coccus-shaped
125439	positive		99.8
125439			91.6
125438			90.5
125438	positive		91.377

Pigmentation

31057

Productionyes

Multimedia

@ref:	20908
multimedia content:	DSM_46721.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46721.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
20908	GPHF-MEDIUM (DSMZ Medium 553)		Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
20908	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20908	positive	growth	28
31057	positive	growth	20-40
31057	positive	optimum	30

Culture pH

@ref	Ability	Type	PH	PH range
31057	positive	optimum	8
31057	positive	growth	06-12	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31057	aerobe
125439	obligate aerobe	99.6

Spore formation

@ref	Spore formation	Confidence
31057
125438		92.03
125439		91.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31057	NaCl	positive	growth	0-4 %
31057	NaCl	positive	optimum	3 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31057	17057 ChEBI	cellobiose	+	carbon source
31057	28757 ChEBI	fructose	+	carbon source
31057	28260 ChEBI	galactose	+	carbon source
31057	17716 ChEBI	lactose	+	carbon source
31057	17814 ChEBI	salicin	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
20908	marine sponge (Xestospongai sp.)	Phuket	Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence JX524154 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	47
Soil Samples	308
Animal Samples	71
Plant Samples	23
Total Samples	449

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20908	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1686349v1 assembly for Micromonospora andamanensis NBRC 109075	contig	GCA_016863495	1287068.3	8069366251	1287068	49.69

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20908	Verrucosispora andamanensis strain SP03-05 16S ribosomal RNA gene, partial sequence	JX524154	1401		1287068

GC content

20908

GC-content (mol%)72.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Micromonospora andamanensis NBRC 109075
NCBI: GCA_016863495

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	91.10	no
125439	motility	BacteriaNetⓘ	no	91.60	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora andamanensis strain NBRC 109075
PATRIC: 1287068.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.38	no
125438	anaerobic	anaerobicⓘ	no	95.32	yes
125438	spore-forming	spore-formingⓘ	yes	92.03	yes
125438	aerobic	aerobicⓘ	yes	89.80	yes
125438	thermophilic	thermophileⓘ	no	92.48	no
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Verrucosispora andamanensis sp. nov., isolated from a marine sponge.	Supong K, Suriyachadkun C, Suwanborirux K, Pittayakhajonwut P, Thawai C	Int J Syst Evol Microbiol	10.1099/ijs.0.050906-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20908	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46721
#27387	IJSEM 3970 2013 ( DOI 10.1099/ijs.0.050906-0 , PubMed 23710052 )
#31057	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27387
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora andamanensis (DSM 46721, BCC 45620, NBRC 109075)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016863495

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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