Name: Dactylosporangium siamense MW4-36
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24209

Type strain:

Species: Dactylosporangium siamense

Strain Designation: MW4-36

Culture col. no.: DSM 46705, BCC 34901, NBRC 106093, JCM 15934

Strain history: S. Chiaraphongphon MW4-36.

NCBI tax ID(s): 685454 (species)

SI-ID 405584

DSM 46705

Special Collections

Section

Dactylosporangium siamense MW4-36 is a spore-forming, Gram-positive, motile bacterium that was isolated from tropical forest soil.

Gram-positive
motile
ovoid-shaped
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Dactylosporangium*
	Species	**Dactylosporangium siamense**
	Full Scientific Name (LPSN)	Dactylosporangium siamense Thawai and Suriyachadkun 2013

Information on morphological and physiological properties Morphology

[Ref.: #31098]	Gram stain	positive

[Ref.: #31098]	Cell shape	ovoid-shaped

[Ref.: #31098]	Motility	yes

[Ref.: #31098]

Pigment production

yes

Multimedia content

[Ref.: #20521]

Caption:

Medium 554 28°C

[Ref.: #20521]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20521]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #20521]

Culture medium growth

[Ref.: #20521]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #20521]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #20521]

Culture medium growth

[Ref.: #20521]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20521]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #20521]	growth	28 °C
[Ref.: #31098]	optimum	29 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31098]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %96

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31098]		NaCl		growth	0-3	%

[Ref.: #67770]

Observation

quinones: MK-9(H₈), MK-9(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31098]	arabinose ChEBI	+	carbon source
[Ref.: #31098]	cellobiose ChEBI	+	carbon source
[Ref.: #31098]	fructose ChEBI	+	carbon source
[Ref.: #31098]	galactose ChEBI	+	carbon source
[Ref.: #31098]	glycerol ChEBI	+	carbon source
[Ref.: #31098]	lactose ChEBI	+	carbon source
[Ref.: #31098]	mannitol ChEBI	+	carbon source
[Ref.: #31098]	melibiose ChEBI	+	carbon source
[Ref.: #31098]	raffinose ChEBI	+	carbon source
[Ref.: #31098]	rhamnose ChEBI	+	carbon source
[Ref.: #31098]	salicin ChEBI	+	carbon source
[Ref.: #31098]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20521]	Sample type/isolated from	tropical forest soil
[Ref.: #20521]	Geographic location (country and/or sea, region)	Nakhon Sawan Province
[Ref.: #20521]	Country	Thailand
[Ref.: #20521]	Country ISO 3 Code	THA
[Ref.: #20521]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from tropical forest
[Ref.: #67770]	Geographic location (country and/or sea, region)	Nakhon Sawan Province
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Climate	#Hot	#Tropical

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB529446 (>99% sequence identity) for Dactylosporangium from Microbeatlas

Aquatic Samples	58
Soil Samples	1581
Animal Samples	75
Plant Samples	21
Total Samples	1735

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20521]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20521]	Dactylosporangium siamense gene for 16S rRNA, partial sequence	AB529446	1433	GenBank ENA	685454 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dactylosporangium siamense NBRC 106093	GCA_016862795	contig	GenBank ENA	685454 tax ID	*
[Ref.: #66792]	Dactylosporangium siamense strain NBRC 106093	685454.3	wgs	PATRIC	685454 tax ID	*

[Ref.: #20521]	GC-content	72.9 mol%
[Ref.: #67770]	GC-content	72 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dactylosporangium siamense strain NBRC 106093 PATRIC: 685454.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	96	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dactylosporangium siamense strain NBRC 106093 PATRIC: 685454.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	80.742	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.813	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	87.146	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.58	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	61.333	no

Availability in culture collections External links

[Ref.: #20521]

Culture collection no.

DSM 46705, BCC 34901, NBRC 106093, JCM 15934

[Ref.: #88155]

SI-ID 405584

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dactylosporangium cerinum sp. nov., a novel actinobacterium isolated from the rhizosphere of Pinus koraiensis Sieb. et Zucc.	Liu C, Guan X, Jin P, Li J, Li Y, Li L, Zhou Y, Shen Y, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0478-3	2015	*
Phylogeny	Dactylosporangium siamense sp. nov., isolated from soil.	Thawai C, Suriyachadkun C	Int J Syst Evol Microbiol	10.1099/ijs.0.052092-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20521

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46705

#31098

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27427 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88155

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405584.1 )

#27427

IJSEM 4033 2013 ( DOI 10.1099/ijs.0.052092-0 , PubMed 23728370 )

* These data were automatically processed and therefore are not curated

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Dactylosporangium siamense strain NBRC 106093

Dactylosporangium siamense strain NBRC 106093

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