Actinoplanes lutulentus (DSM 45883, CGMCC 4.7090, NEAU-GRX6)

Name: Actinoplanes lutulentus (DSM 45883, CGMCC 4.7090, NEAU-GRX6)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24208

Type strain

Strain Designation NEAU-GRX6

Culture col. no. DSM 45883 CGMCC 4.7090 NEAU-GRX6 JCM 30776

NCBI tax ID(s) 1287878

Special Collections DSMZ JCM

History <- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-GRX6 <- R. Gao, Northeast Agricultural Univ., Harbin, China CGMCC 4.7090 <-- R. Gao et al.; Northeast Agric. Univ., China; NEAU-GRX6.

Links

Actinoplanes lutulentus NEAU-GRX6 is a bacterium that was isolated from mucky soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398769

DSM 45883

@ref 20215

Last LPSN update 2026-02-09 11:23:55

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Actinoplanes

Species Actinoplanes lutulentus

Full scientific name Actinoplanes lutulentus Gao et al. 2014

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.3

Multimedia

@ref:	20247
multimedia content:	DSM_45883.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45883.jpg
caption:	Medium 554 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
20247	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
20247	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
20247	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
20247	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
20247	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.5

Observation

67770

Observationquinones: MK-9(H₆), MK-10(H₄), MK-9(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
20247	mucky soil	Heilongjiang Province, Harbin, Jinlong Mountain (45° 30' N 127° 06' E)	China	CHN	Asia	45.5	127.1 45.5/127.1
67770	Mucky soil from a stream of Jinlong Mountain	Harbin, Heilongjiang Province, north China	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KC134255 (>99% sequence identity) for Actinoplanes lutulentus from Microbeatlas

Aquatic Samples	9
Soil Samples	77
Animal Samples	32
Plant Samples	4
Total Samples	122

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
20247	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1419123v1 assembly for Actinoplanes lutulentus DSM 45883	contig	GCA_014191235	1287878.5	2824186164	1287878	71.64
67770	ASM325984v1 assembly for Actinoplanes lutulentus CGMCC 4.7090	scaffold	GCA_003259845	1287878.3	2718217682	1287878	65.74

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20247	Actinoplanes lutulentus strain NEAU-GRX6 from China 16S ribosomal RNA gene, partial sequence	KC134255	1508		1287878

GC content

@ref	GC-content (mol%)	Method
20247	67	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinoplanes lutulentus CGMCC 4.7090
NCBI: GCA_003259845

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.50	no
125439	gram_stain	BacteriaNetⓘ	positive	99.30	no
125439	motility	BacteriaNetⓘ	no	87.10	no
125439	spore_formation	BacteriaNetⓘ	yes	76.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinoplanes lutulentus strain CGMCC 4.7090
PATRIC: 1287878.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.52	no
125438	anaerobic	anaerobicⓘ	no	94.97	no
125438	spore-forming	spore-formingⓘ	yes	82.05	no
125438	aerobic	aerobicⓘ	yes	88.26	no
125438	thermophilic	thermophileⓘ	no	95.25	yes
125438	flagellated	motile2+ⓘ	no	61.33	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoplanes aureus sp. nov., a novel protease-producing actinobacterium isolated from soil.	Song J, Sun X, Luo X, He C, Huang Z, Zhao J, He B, Du X, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-021-01617-4	2021
Phylogeny	Actinoplanes lutulentus sp. nov., isolated from mucky soil in China.	Gao R, Liu C, Zhao J, Jia F, Li C, Xing J, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijs.0.057802-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20247	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45883
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinoplanes lutulentus (DSM 45883, CGMCC 4.7090, NEAU-GRX6)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014191235

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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