Strain identifier

BacDive ID: 24209

Type strain: Yes

Species: Dactylosporangium siamense

Strain Designation: MW4-36

Strain history: S. Chiaraphongphon MW4-36.

NCBI tax ID(s): 685454 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20521

BacDive-ID: 24209

DSM-Number: 46705

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive, motile, ovoid-shaped

description: Dactylosporangium siamense MW4-36 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from tropical forest soil.

NCBI tax id

  • NCBI tax id: 685454
  • Matching level: species

strain history

@refhistory
20521<- C Suriyachadkun, BCC; BCC 34901 <- C. Thawai; MW4-36
67770S. Chiaraphongphon MW4-36.

doi: 10.13145/bacdive24209.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Dactylosporangium
  • species: Dactylosporangium siamense
  • full scientific name: Dactylosporangium siamense Thawai and Suriyachadkun 2013

@ref: 20521

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Dactylosporangium

species: Dactylosporangium siamense

full scientific name: Dactylosporangium siamense Thawai and Suriyachadkun 2013

strain designation: MW4-36

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
31098positiveovoid-shapedyes
69480positive100

pigmentation

  • @ref: 31098
  • production: yes

multimedia

  • @ref: 20521
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46705.jpg
  • caption: Medium 554 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
20521GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf
20521N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://mediadive.dsmz.de/medium/554Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
31098positiveoptimum29mesophilic
67770positivegrowth28mesophilic
20521positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
31098yes
69481yes96
69480yes100

halophily

  • @ref: 31098
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-3 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8), MK-9(H6)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3109822599arabinose+carbon source
3109817057cellobiose+carbon source
3109828757fructose+carbon source
3109828260galactose+carbon source
3109817754glycerol+carbon source
3109817716lactose+carbon source
3109829864mannitol+carbon source
3109828053melibiose+carbon source
3109816634raffinose+carbon source
3109826546rhamnose+carbon source
3109817814salicin+carbon source
3109818222xylose+carbon source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
20521tropical forest soilNakhon Sawan ProvinceThailandTHAAsia
67770Soil from tropical forestNakhon Sawan ProvinceThailandTHAAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil
#Climate#Hot#Tropical

taxonmaps

  • @ref: 69479
  • File name: preview.99_875.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_521;97_600;98_690;99_875&stattab=map
  • Last taxonomy: Dactylosporangium
  • 16S sequence: AB529446
  • Sequence Identity:
  • Total samples: 1735
  • soil counts: 1581
  • aquatic counts: 58
  • animal counts: 75
  • plant counts: 21

Safety information

risk assessment

  • @ref: 20521
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20521
  • description: Dactylosporangium siamense gene for 16S rRNA, partial sequence
  • accession: AB529446
  • length: 1433
  • database: ena
  • NCBI tax ID: 685454

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Dactylosporangium siamense NBRC 106093GCA_016862795contigncbi685454
66792Dactylosporangium siamense strain NBRC 106093685454.3wgspatric685454

GC content

@refGC-contentmethod
2052172.9
6777072high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes96no
gram-positiveyes85.114no
anaerobicno99.016no
halophileno96.803no
spore-formingyes94.207yes
glucose-utilyes90.059no
thermophileno99.351yes
flagellatedno89.363no
motileyes66.01yes
aerobicyes92.778no
glucose-fermentno89.708no

External links

@ref: 20521

culture collection no.: DSM 46705, BCC 34901, NBRC 106093, JCM 15934

straininfo link

  • @ref: 88155
  • straininfo: 405584

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23728370Dactylosporangium siamense sp. nov., isolated from soil.Thawai C, Suriyachadkun CInt J Syst Evol Microbiol10.1099/ijs.0.052092-02013Bacterial Typing Techniques, Base Composition, Carbohydrates/chemistry, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Micromonosporaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Trees/microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny25987396Dactylosporangium cerinum sp. nov., a novel actinobacterium isolated from the rhizosphere of Pinus koraiensis Sieb. et Zucc.Liu C, Guan X, Jin P, Li J, Li Y, Li L, Zhou Y, Shen Y, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-015-0478-32015Carbohydrates/analysis, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Japan, Micromonosporaceae/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Pinus/*microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/cytology, Vitamin K 2/analysisGenetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20521Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-46705Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46705)
31098Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172742728776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88155Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405584.1