Name: Methanococcoides methylutens MM1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24161

Type strain:

Species: Methanococcoides methylutens

Strain Designation: MM1

Culture col. no.: DSM 16625

Strain history: <- H. J. M. Op den Camp, Dept. Microbiol., Univ. Nijmegen, Netherlands; MM1 <- T. J. Lyimo {1998}

NCBI tax ID(s): 2226 (species)

SI-ID 402046

DSM 16625

Other strains from Methanococcoides methylutens

M. methylutens TMA-10, DSM 2657, ATCC 33938, OCM ... (type strain)

Section

Methanococcoides methylutens MM1 is an anaerobe, mesophilic archaeon that was isolated from mangrove sediment.

anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanosarcinales*
	Family	*Methanosarcinaceae*
	Genus	*Methanococcoides*
	Species	**Methanococcoides methylutens**
	Full Scientific Name (LPSN)	Methanococcoides methylutens Sowers and Ferry 1985

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21014]

Culture medium

METHANOCOCCOIDES MEDIUM (DSMZ Medium 141c)

[Ref.: #21014]

Culture medium growth

[Ref.: #21014]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21014]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21014]			growth	30 °C

[Ref.: #21014]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21014]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21014]	Sample type/isolated from	mangrove sediment
[Ref.: #21014]	Geographic location (country and/or sea, region)	Dar es Salaam
[Ref.: #21014]	Country	Tanzania
[Ref.: #21014]	Country ISO 3 Code	TZA
[Ref.: #21014]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Aquatic	#Sediment
#Host	#Plants	#Tree

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21014]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21014]	Methanococcoides methylutens strain MM1 16S ribosomal RNA gene, partial sequence	FJ477324	1326	ENA	2226 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanococcoides methylutens MM1	GCA_000970325	complete	GenBank	1434104 tax ID	*
[Ref.: #66792]	Methanococcoides methylutens MM1	2639762999	complete	JGI IMG/M	1434104 tax ID	*
[Ref.: #66792]	Methanococcoides methylutens MM1	1434104.11	complete	PATRIC	1434104 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanococcoides methylutens MM1 MM1 NCBI: GCA_000970325.1
[Ref.: #69480]	motile	no	94.215	no
[Ref.: #69480]	flagellated	no	97.492	no
[Ref.: #69480]	gram-positive	no	97.471	no
[Ref.: #69480]	anaerobic	yes	97.84	yes
[Ref.: #69480]	aerobic	no	94.174	yes
[Ref.: #69480]	halophile	no	79.664	no
[Ref.: #69480]	spore-forming	no	96.668	no
[Ref.: #69480]	thermophile	no	96.399	yes
[Ref.: #69480]	glucose-util	yes	72.619	no
[Ref.: #69480]	glucose-ferment	no	70.178	no

Availability in culture collections External links

[Ref.: #21014]

Culture collection no.

DSM 16625

[Ref.: #88117]

SI-ID 402046

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21014

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16625

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88117

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402046.1 )

* These data were automatically processed and therefore are not curated

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Methanococcoides methylutens MM1 MM1

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