Name: Methanococcoides methylutens TMA-10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7058

Type strain:

Species: Methanococcoides methylutens

Strain Designation: TMA-10

Culture col. no.: DSM 2657, ATCC 33938, OCM 158

Strain history: <- K.R. Sowers and J.G. Ferry, TMA-10

NCBI tax ID(s): 2226 (species)

SI-ID 40773

ATCC 33938, DSM 2657, BCRC 16168, CCRC 16168

Other strains from Methanococcoides methylutens

M. methylutens MM1, DSM 16625

Section

Methanococcoides methylutens TMA-10 is an anaerobe, mesophilic archaeon that was isolated from marine sediment.

anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanosarcinales*
	Family	*Methanosarcinaceae*
	Genus	*Methanococcoides*
	Species	**Methanococcoides methylutens**
	Full Scientific Name (LPSN)	Methanococcoides methylutens Sowers and Ferry 1985

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1191]

Culture medium

METHANOCOCCOIDES MEDIUM (DSMZ Medium 141c)

[Ref.: #1191]

Culture medium growth

[Ref.: #1191]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1191]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1191]			growth	30 °C

[Ref.: #1191]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1191]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1191]	Sample type/isolated from	marine sediment
[Ref.: #1191]	Geographic location (country and/or sea, region)	California, Scripps Canyon near La Jolla
[Ref.: #1191]	Country	USA
[Ref.: #1191]	Country ISO 3 Code	USA
[Ref.: #1191]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR733669 (>99% sequence identity) for Methanococcoides from Microbeatlas

Aquatic Samples	53
Soil Samples	2
Animal Samples
Plant Samples
Total Samples	55

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1191]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1191]	Methanococcoides methylutens partial 16S rRNA gene, type strain DSM2657T	FR733669	1468	ENA	2226 tax ID
[Ref.: #20218]	Methylcoccoides methylutans 16S ribosomal RNA	M59127	1477	ENA	2226 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanococcoides methylutens DSM 2657	GCA_000765475	contig	GenBank	2226 tax ID	*
[Ref.: #66792]	Methanococcoides methylutens DSM2657	GCA_900773915	contig	GenBank	2226 tax ID	*
[Ref.: #66792]	Methanococcoides methylutens DSM 2657	2630968972	draft	JGI IMG/M	2226 tax ID	*
[Ref.: #66792]	Methanococcoides methylutens strain DSM2657	2226.10	wgs	PATRIC	2226 tax ID	*
[Ref.: #66792]	Methanococcoides methylutens strain DSM 2657	2226.9	wgs	PATRIC	2226 tax ID	*

[Ref.: #1191]

GC-content

42.0 mol%

Availability in culture collections External links

[Ref.: #1191]

Culture collection no.

DSM 2657, ATCC 33938, OCM 158

[Ref.: #76515]

SI-ID 40773

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanococcoides orientis sp. nov., a methylotrophic methanogen isolated from sediment of the East China Sea.	Liang L, Sun Y, Dong Y, Ahmad T, Chen Y, Wang J, Wang F	Int J Syst Evol Microbiol	10.1099/ijsem.0.005384	2022	*
Metabolism	Mineralogical control on methylotrophic methanogenesis and implications for cryptic methane cycling in marine surface sediment.	Xiao KQ, Moore OW, Babakhani P, Curti L, Peacock CL	Nat Commun	10.1038/s41467-022-30422-4	2022	*
Phylogeny	Methanococcoides vulcani sp. nov., a marine methylotrophic methanogen that uses betaine, choline and N,N-dimethylethanolamine for methanogenesis, isolated from a mud volcano, and emended description of the genus Methanococcoides.	L'Haridon S, Chalopin M, Colombo D, Toffin L	Int J Syst Evol Microbiol	10.1099/ijs.0.058289-0	2014	*
Phylogeny	Isolation and Characterization of a Methylotrophic Marine Methanogen, Methanococcoides methylutens gen. nov., sp. nov.	Sowers KR, Ferry JG	Appl Environ Microbiol	10.1128/aem.45.2.684-690.1983	1983	*

References

#1191

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2657

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76515

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40773.1 )

* These data were automatically processed and therefore are not curated

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