Name: Methanomethylovorans uponensis EK1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24160

Type strain:

Species: Methanomethylovorans uponensis

Strain Designation: EK1

Culture col. no.: DSM 27305, JCM 19217, KCTC 4119, NBRC 109636

Strain history: S.-K. Rhee EK1.

NCBI tax ID(s): 1341726 (species)

SI-ID 398372

DSM 27305

Section

Methanomethylovorans uponensis EK1 is an anaerobe, mesophilic archaeon that was isolated from wetland sediment.

anaerobe
mesophilic
16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanosarcinales*
	Family	*Methanosarcinaceae*
	Genus	*Methanomethylovorans*
	Species	**Methanomethylovorans uponensis**
	Full Scientific Name (LPSN)	Methanomethylovorans uponensis Cha et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #20646]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20646]

Culture medium

ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503)

[Ref.: #20646]

Culture medium growth

[Ref.: #20646]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20646]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20646]			growth	35 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #20646]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #20646]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20646]	Sample type/isolated from	wetland sediment
[Ref.: #20646]	Geographic location (country and/or sea, region)	Upo wetland
[Ref.: #20646]	Country	Republic of Korea
[Ref.: #20646]	Country ISO 3 Code	KOR
[Ref.: #20646]	Continent	Asia
[Ref.: #20646]	Geographic location	35.5333°/128.4170°

[Ref.: #67770]	Sample type/isolated from	Sediment from Upo wetland
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Wetland (Swamp)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20646]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20646]	Methanomethylovorans uponensis strain EK1 from South Korea 16S ribosomal RNA gene, partial sequence	KC876048	1387	ENA	1341726 tax ID

[Ref.: #20646]

GC-content

39.2 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #20646]

Culture collection no.

DSM 27305, JCM 19217, KCTC 4119, NBRC 109636

[Ref.: #88116]

SI-ID 398372

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanomethylovorans uponensis sp. nov., a methylotrophic methanogen isolated from wetland sediment.	Cha IT, Min UG, Kim SJ, Yim KJ, Roh SW, Rhee SK	Antonie Van Leeuwenhoek	10.1007/s10482-013-0020-4	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20646

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27305

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#88116

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398372.1 )

* These data were automatically processed and therefore are not curated

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