Name: Methanobrevibacter boviskoreani JH-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 24156

Type strain:

Species: Methanobrevibacter boviskoreani

Strain Designation: JH-1, JH1

Culture col. no.: DSM 25824, JCM 18376, KCTC 4102

Strain history: KCTC 4102 <-- B.-C. Kim JH1.

NCBI tax ID(s): 1348249 (species)

SI-ID 407792

DSM 25824

Section

Methanobrevibacter boviskoreani JH-1 is an anaerobe, mesophilic, Gram-positive archaeon that was isolated from rumen fluid of the Korean native cattle .

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Methanobacteria*
	Order	*Methanobacteriales*
	Family	*Methanobacteriaceae*
	Genus	*Methanobrevibacter*
	Species	**Methanobrevibacter boviskoreani**
	Full Scientific Name (LPSN)	Methanobrevibacter boviskoreani Lee et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #31157]	Gram stain	positive

[Ref.: #31157]	Cell length	1.65 µm

[Ref.: #31157]	Cell width	0.6 µm

[Ref.: #31157]	Cell shape	rod-shaped

[Ref.: #31157]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21011]

Culture medium

METHANOBACTERIUM MEDIUM (DSMZ Medium 119)

[Ref.: #21011]

Culture medium growth

[Ref.: #21011]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21011]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21011]	growth	37 °C
[Ref.: #31157]	optimum	38.5 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #21011]	Temperature range	mesophilic
[Ref.: #31157]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31157]			optimum	6.75

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21011]	Oxygen tolerance	anaerobe
[Ref.: #31157]	Oxygen tolerance	anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31157]		NaCl		growth	0.58-2.9	%

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21011]	Sample type/isolated from	rumen fluid of the Korean native cattle (HanWoo, Bos taurus coreanae)
[Ref.: #21011]	Host species	Bos taurus coreanae
[Ref.: #21011]	Geographic location (country and/or sea, region)	Gwonsun-Gu, Suwon
[Ref.: #21011]	Country	Republic of Korea
[Ref.: #21011]	Country ISO 3 Code	KOR
[Ref.: #21011]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Rumen of the Korean native cattle (HanWoo; Bos taurus coreanae) in South Korea
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen
#Host Body Product	#Fluids	#Rumen fluid

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC608769 (>99% sequence identity) for Methanobrevibacter from Microbeatlas

Aquatic Samples	137
Soil Samples	94
Animal Samples	594
Plant Samples	47
Total Samples	872

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21011]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21011]	Methanobrevibacter boviskoreani JH1 16S ribosomal RNA gene, partial sequence	KC608769	1274	ENA	1214066 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanobrevibacter boviskoreani JH1	GCA_000320505	contig	GenBank	1214066 tax ID	*
[Ref.: #66792]	Methanobrevibacter boviskoreani JH1	2551306657	draft	JGI IMG/M	1214066 tax ID	*
[Ref.: #66792]	Methanobrevibacter boviskoreani JH1	1214066.4	wgs	PATRIC	1214066 tax ID	*

[Ref.: #21011]	GC-content	28.9 mol%	sequence analysis
[Ref.: #31157]	GC-content	28 mol%
[Ref.: #67770]	GC-content	28 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #21011]

Culture collection no.

DSM 25824, JCM 18376, KCTC 4102

[Ref.: #88114]

SI-ID 407792

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanobrevibacter boviskoreani sp. nov., isolated from the rumen of Korean native cattle.	Lee JH, Kumar S, Lee GH, Chang DH, Rhee MS, Yoon MH, Kim BC	Int J Syst Evol Microbiol	10.1099/ijs.0.054056-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21011

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25824

#31157

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27485 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88114

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407792.1 )

#27485

IJSEM 4196 2013 ( DOI 10.1099/ijs.0.054056-0 , PubMed 23771627 )

* These data were automatically processed and therefore are not curated

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