Name: Methanobacterium paludis SWAN1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24155

Type strain:

Species: Methanobacterium paludis

Strain Designation: SWAN1

Culture col. no.: DSM 25820, JCM 18151

Strain history: H. Cadillo-Quiroz SWAN1.

NCBI tax ID(s): 868131 (species)

SI-ID 404826

DSM 25820

Special Collections

DSMZ
JCM

Section

Methanobacterium paludis SWAN1 is an anaerobe, psychrophilic archaeon that was isolated from peat soil from a minerotrophic circumneutral peatland.

anaerobe
psychrophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Archaea*
	Phylum	*Methanobacteriota*
	Class	*Methanobacteria*
	Order	*Methanobacteriales*
	Family	*Methanobacteriaceae*
	Genus	*Methanobacterium*
	Species	**Methanobacterium paludis**
	Full Scientific Name (LPSN)	Methanobacterium paludis Cadillo-Quiroz et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #21010]

Incubation period

>14 days

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	24 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21010]

Oxygen tolerance

anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %91.078
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21010]	Sample type/isolated from	peat soil from a minerotrophic circumneutral peatland
[Ref.: #21010]	Geographic location (country and/or sea, region)	New York, Ithaca; Michigan Hollow fen near Danby
[Ref.: #21010]	Country	USA
[Ref.: #21010]	Country ISO 3 Code	USA
[Ref.: #21010]	Continent	North America
[Ref.: #21010]	Geographic location	42.3167°/-76.4833°

[Ref.: #67770]	Sample type/isolated from	Near circumneutral temperate minerotrophic fen
[Ref.: #67770]	Geographic location (country and/or sea, region)	NY
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence CP002772 (>99% sequence identity) for Methanobacterium paludis subclade from Microbeatlas

Aquatic Samples	1208
Soil Samples	279
Animal Samples	93
Plant Samples	190
Total Samples	1770

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21010]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Methanobacterium paludis strain SWAN1, complete genome	CP002772	2546541	GenBank ENA	868131 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanobacterium paludis SWAN1	GCA_000214725	complete	GenBank ENA	868131 tax ID	*

[Ref.: #21010]	GC-content	35.7 mol%	sequence analysis
[Ref.: #67770]	GC-content	35.7 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Methanobacterium paludis SWAN1 NCBI: GCA_000214725.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanobacterium paludis SWAN1 NCBI: GCA_000214725.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	62.975	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	86.592	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	86.79	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.078	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	75.906	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.875	no

Availability in culture collections External links

[Ref.: #21010]

Culture collection no.

DSM 25820, JCM 18151

[Ref.: #88113]

SI-ID 404826

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanobacterium paludis sp. nov. and a novel strain of Methanobacterium lacus isolated from northern peatlands.	Cadillo-Quiroz H, Brauer SL, Goodson N, Yavitt JB, Zinder SH	Int J Syst Evol Microbiol	10.1099/ijs.0.059964-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21010

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25820

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88113

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404826.1 )

* These data were automatically processed and therefore are not curated

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