Methanobacterium paludis (DSM 25820, JCM 18151, SWAN1)

Name: Methanobacterium paludis (DSM 25820, JCM 18151, SWAN1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24155

Type strain

Strain Designation SWAN1

Culture col. no. DSM 25820 JCM 18151 SWAN1

NCBI tax ID(s) 868131

Special Collections DSMZ JCM

History <- H. Cadillo-Quiroz, School of Life Sciences, Arizona State University, USA; SWAN1 <- H. Cadillo-Quiroz, Dept. Microbiology, Cornell Univ., Ithaca, USA {2008} H. Cadillo-Quiroz SWAN1.

Links

Methanobacterium paludis SWAN1 is an anaerobe, psychrophilic prokaryote that was isolated from peat soil from a minerotrophic circumneutral peatland.

anaerobe psychrophilic genome sequence

Name and taxonomic classification

SI-ID 404826

JCM 18151,DSM 25820

@ref 20215

Last LPSN update 2026-02-09 11:23:54

Domain Archaea

Phylum Methanobacteriota

Class Methanobacteria

Order Methanobacteriales

Family Methanobacteriaceae

Genus Methanobacterium

Species Methanobacterium paludis

Full scientific name Methanobacterium paludis Cadillo-Quiroz et al. 2014

Morphology

Colony morphology

21010

Incubation period>14 days

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	24	psychrophilic

Physiology and metabolism

Oxygen tolerance

21010

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125438		91.078

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
21010	peat soil from a minerotrophic circumneutral peatland	New York, Ithaca; Michigan Hollow fen near Danby	USA	USA	North America	42.3167	-76.4833 42.3167/-76.4833
67770	Near circumneutral temperate minerotrophic fen	NY	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence CP002772 (>99% sequence identity) for Methanobacterium paludis subclade from Microbeatlas

Aquatic Samples	1208
Soil Samples	279
Animal Samples	93
Plant Samples	190
Total Samples	1770

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21010	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM21472v1 assembly for Methanobacterium paludis SWAN1	complete	GCA_000214725	868131.7	650716053	868131	99.1

GC content

@ref	GC-content (mol%)	Method
21010	35.7	sequence analysis
67770	35.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Methanobacterium paludis SWAN1
NCBI: GCA_000214725.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	62.98	no
125438	anaerobic	anaerobicⓘ	yes	86.59	yes
125438	aerobic	aerobicⓘ	no	86.79	yes
125438	spore-forming	spore-formingⓘ	no	91.08	no
125438	thermophilic	thermophileⓘ	no	75.91	yes
125438	flagellated	motile2+ⓘ	no	88.88	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanobacterium paludis sp. nov. and a novel strain of Methanobacterium lacus isolated from northern peatlands.	Cadillo-Quiroz H, Brauer SL, Goodson N, Yavitt JB, Zinder SH	Int J Syst Evol Microbiol	10.1099/ijs.0.059964-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21010	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25820
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Methanobacterium paludis (DSM 25820, JCM 18151, SWAN1)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000214725

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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