Strain identifier
BacDive ID: 24156
Type strain: 
Species: Methanobrevibacter boviskoreani
Strain Designation: JH-1, JH1
Strain history: KCTC 4102 <-- B.-C. Kim JH1.
NCBI tax ID(s): 1348249 (species)
version 8.1 (current version)
General
@ref: 21011
BacDive-ID: 24156
DSM-Number: 25824
keywords: genome sequence, 16S sequence, Archaea, anaerobe, mesophilic, Gram-positive, rod-shaped
description: Methanobrevibacter boviskoreani JH-1 is an anaerobe, mesophilic, Gram-positive archaeon that was isolated from rumen fluid of the Korean native cattle .
NCBI tax id
- NCBI tax id: 1348249
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21011 | <- B.-C. Kim, KCTC; JH1 <- B.-C. Kim and J. H. Lee |
| 67770 | KCTC 4102 <-- B.-C. Kim JH1. |
doi: 10.13145/bacdive24156.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanobacteria
- order: Methanobacteriales
- family: Methanobacteriaceae
- genus: Methanobrevibacter
- species: Methanobrevibacter boviskoreani
- full scientific name: Methanobrevibacter boviskoreani Lee et al. 2013
@ref: 21011
domain: Archaea
phylum: Euryarchaeota
class: Methanobacteria
order: Methanobacteriales
family: Methanobacteriaceae
genus: Methanobrevibacter
species: Methanobrevibacter boviskoreani
full scientific name: Methanobrevibacter boviskoreani Lee et al. 2013
strain designation: JH-1, JH1
type strain: yes
Morphology
cell morphology
- @ref: 31157
- gram stain: positive
- cell length: 1.65 µm
- cell width: 0.6 µm
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
- @ref: 21011
- name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119)
- growth: yes
- link: https://mediadive.dsmz.de/medium/119
- composition: Name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119; with strain-specific modifications) Composition: NaHCO3 3.98804 g/l Na-formate 1.99402 g/l Na-acetate 0.997009 g/l L-Cysteine HCl x H2O 0.498504 g/l Na2S x 9 H2O 0.498504 g/l KH2PO4 0.498504 g/l MgSO4 x 7 H2O 0.398804 g/l NaCl 0.398804 g/l NH4Cl 0.398804 g/l Yeast extract 0.199402 g/l 2-Mercaptoethanesulfonic acid 0.0997009 g/l CaCl2 x 2 H2O 0.0498504 g/l HCl 0.00249252 g/l FeSO4 x 7 H2O 0.00199402 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Isovaleric acid Valeric acid DL-2-Methylbutyric acid Isobutyric acid Sludge H2SO4 Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21011 | positive | growth | 37 | mesophilic |
| 31157 | positive | optimum | 38.5 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
culture pH
- @ref: 31157
- ability: positive
- type: optimum
- pH: 6.75
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 21011 | anaerobe |
| 31157 | anaerobe |
halophily
- @ref: 31157
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0.58-2.9 %
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 21011 | rumen fluid of the Korean native cattle (HanWoo, Bos taurus coreanae) | Bos taurus coreanae | Gwonsun-Gu, Suwon | Republic of Korea | KOR | Asia |
| 67770 | Rumen of the Korean native cattle (HanWoo; Bos taurus coreanae) in South Korea |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
| #Host Body-Site | #Organ | #Rumen |
| #Host Body Product | #Fluids | #Rumen fluid |
taxonmaps
- @ref: 69479
- File name: preview.99_187104.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17907;96_68791;97_89433;98_121703;99_187104&stattab=map
- Last taxonomy: Methanobrevibacter
- 16S sequence: KC608769
- Sequence Identity:
- Total samples: 872
- soil counts: 94
- aquatic counts: 137
- animal counts: 594
- plant counts: 47
Safety information
risk assessment
- @ref: 21011
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21011
- description: Methanobrevibacter boviskoreani JH1 16S ribosomal RNA gene, partial sequence
- accession: KC608769
- length: 1274
- database: ena
- NCBI tax ID: 1214066
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Methanobrevibacter boviskoreani JH1 | GCA_000320505 | contig | ncbi | 1214066 |
| 66792 | Methanobrevibacter boviskoreani JH1 | 2551306657 | draft | img | 1214066 |
| 66792 | Methanobrevibacter boviskoreani JH1 | 1214066.4 | wgs | patric | 1214066 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 21011 | 28.9 | sequence analysis |
| 31157 | 28 | |
| 67770 | 28 | high performance liquid chromatography (HPLC) |
External links
@ref: 21011
culture collection no.: DSM 25824, JCM 18376, KCTC 4102
straininfo link
- @ref: 88114
- straininfo: 407792
literature
- topic: Phylogeny
- Pubmed-ID: 23771627
- title: Methanobrevibacter boviskoreani sp. nov., isolated from the rumen of Korean native cattle.
- authors: Lee JH, Kumar S, Lee GH, Chang DH, Rhee MS, Yoon MH, Kim BC
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.054056-0
- year: 2013
- mesh: Animals, Bacterial Typing Techniques, Base Composition, Cattle/*microbiology, Cell Wall/chemistry, Methanobrevibacter/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/genetics, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rumen/*microbiology, Sequence Analysis, DNA
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21011 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25824 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25824) | |||
| 31157 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27485 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 88114 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407792.1 |