Name: Lacticaseibacillus songhuajiangensis 7-19
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24140

Type strain:

Species: Lacticaseibacillus songhuajiangensis

Strain Designation: 7-19

Culture col. no.: KCTC 21025, DSM 28401, CCUG 62990, LMG 27191, NCIMB 14832, JCM 30918, CIP 110708

Strain history: CIP <- 2014, LMG <- 2011, 2012, C. Gu, Northeast Agric. Univ., Heilongjiang Province, China: strain 7-19

NCBI tax ID(s): 1296539 (species)

SI-ID 381216

LMG 27191, NCIMB 14832, CCUG 62990, JCM 30918, DSM 28401, CIP 110708

Special Collections

Section

When using BacDive for research please cite our paper

Lacticaseibacillus songhuajiangensis 7-19 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from From traditional sourdough.

Gram-positive
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lacticaseibacillus*
	Species	**Lacticaseibacillus songhuajiangensis**
	Full Scientific Name (LPSN)	Lacticaseibacillus songhuajiangensis (Gu et al. 2013) Zheng et al. 2020

Synonym

Lactobacillus songhuajiangensis

Information on morphological and physiological properties Morphology

[Ref.: #31160]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #122677]	Gram stain	positive

[Ref.: #31160]	Cell length	3 µm

[Ref.: #31160]	Cell width	0.9 µm

[Ref.: #31160]	Cell shape	rod-shaped
[Ref.: #122677]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #31160]	Motility	no
[Ref.: #122677]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #62927]

Incubation period

1 day

[Ref.: #31160]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41612]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #41612]

Culture medium growth

[Ref.: #41612]

Culture medium composition

expand / minimize

[Ref.: #21000]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #21000]

Culture medium growth

[Ref.: #21000]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21000]

Culture medium composition

expand / minimize

[Ref.: #122677]

Culture medium

CIP Medium 40

[Ref.: #122677]

Culture medium growth

[Ref.: #122677]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #21000]	growth	30 °C
[Ref.: #31160]	optimum	37 °C
[Ref.: #41612]	growth	30 °C
[Ref.: #62927]	growth	37 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31160]			optimum	4

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21000]	Oxygen tolerance	microaerophile
[Ref.: #31160]	Oxygen tolerance	facultative anaerobe
[Ref.: #62927]	Oxygen tolerance	microaerophile
[Ref.: #67771]	Oxygen tolerance	microaerophile

[Ref.: #31160]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31160]		NaCl		growth	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31160]	cellobiose ChEBI	+	carbon source
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31160]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31160]	galactose ChEBI	+	carbon source
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31160]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31160]	lactose ChEBI	+	carbon source
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31160]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31160]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31160]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31160]	sucrose ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31160]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #21000]	15644	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+/-	-	+	+	+	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From traditional sourdough
[Ref.: #67771]	Geographic location (country and/or sea, region)	Heilongjiang province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #21000]	Sample type/isolated from	traditional sourdough
[Ref.: #21000]	Geographic location (country and/or sea, region)	Heilongjiang province
[Ref.: #21000]	Country	China
[Ref.: #21000]	Country ISO 3 Code	CHN
[Ref.: #21000]	Continent	Asia

[Ref.: #62927]	Sample type/isolated from	Sourdough
[Ref.: #62927]	Sampling date	2010-06-01
[Ref.: #62927]	Geographic location (country and/or sea, region)	Heilongjiang province
[Ref.: #62927]	Country	China
[Ref.: #62927]	Country ISO 3 Code	CHN
[Ref.: #62927]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Traditional sourdough
[Ref.: #67770]	Geographic location (country and/or sea, region)	Heilongjiang Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #122677]	Sample type/isolated from	Traditional sourdough
[Ref.: #122677]	Geographic location (country and/or sea, region)	Heilongjiang Province, China
[Ref.: #122677]	Country	China
[Ref.: #122677]	Country ISO 3 Code	CHN
[Ref.: #122677]	Continent	Asia
[Ref.: #122677]	Isolation date	2011-01-03
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Food

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HF679038 (>99% sequence identity) for Lacticaseibacillus songhuajiangensis subclade from Microbeatlas

Aquatic Samples	45
Soil Samples	55
Animal Samples	566
Plant Samples	50
Total Samples	716

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21000]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122677]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21000]	Lactobacillus songhuajiangensis partial 16S rRNA gene, type strain 7-19T	HF679038	1448	GenBank ENA	1296539 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lacticaseibacillus songhuajiangensis 7-19	GCA_003946025	contig	GenBank ENA	1296539 tax ID
[Ref.: #66792]	Lacticaseibacillus songhuajiangensis 7-19	2881703511	draft	JGI IMG/M	1296539 tax ID	*

[Ref.: #21000]	GC-content	53.2 mol%
[Ref.: #67770]	GC-content	53.2 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	52.7 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lacticaseibacillus songhuajiangensis 7-19 NCBI: GCA_003946025
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	66.3
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	52.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	80.1
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	microaerophile	89.9

Availability in culture collections External links

[Ref.: #21000]

Culture collection no.

KCTC 21025, DSM 28401, CCUG 62990, LMG 27191, NCIMB 14832, JCM 30918, CIP 110708

[Ref.: #88098]

SI-ID 381216

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus mudanjiangensis sp. nov., Lactobacillus songhuajiangensis sp. nov. and Lactobacillus nenjiangensis sp. nov., isolated from Chinese traditional pickle and sourdough.	Gu CT, Li CY, Yang LJ, Huo GC	Int J Syst Evol Microbiol	10.1099/ijs.0.054296-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21000

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28401

#31160

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27488 (see below)

#41612 ; Curators of the CIP;
#62927 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62990

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#88098

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID381216.1 )

#122677 Collection of Institut Pasteur ; Curators of the CIP; CIP 110708

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#27488

IJSEM 4698 2013 ( DOI 10.1099/ijs.0.054296-0 , PubMed 23950151 )

* These data were automatically processed and therefore are not curated

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