Lacticaseibacillus songhuajiangensis (KCTC 21025, DSM 28401, CCUG 62990)

Name: Lacticaseibacillus songhuajiangensis (KCTC 21025, DSM 28401, CCUG 62990)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 24140

Type strain

Strain Designation 7-19

Culture col. no. KCTC 21025 DSM 28401 CCUG 62990 LMG 27191 NCIMB 14832 3 more

NCBI tax ID(s) 1296539

Special Collections DSMZ CCUG JCM KCTC Literature strains CIP

History <- CCUG; CCUG 62990 <- C. T. Gu, Northeast Agricultural Univ., Harbin, China; 7-19 LMG 27191 <-- C. T. Gu; Northeast Agric. Univ., China; 7-19. <- CCUG <- Chuntao Gu, Northeast Agricultural Univ., Harbin, China, 7-19 CIP <- 2014, LMG <- 2011, 2012, C. Gu, Northeast Agric. Univ., Heilongjiang Province, China: strain 7-19

Links

Lacticaseibacillus songhuajiangensis 7-19 is a microaerophile, mesophilic, Gram-positive prokaryote that was isolated from From traditional sourdough.

Gram-positive rod-shaped microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 381216

KCTC 21025,LMG 27191,NCIMB 14832,CCUG 62990,JCM 30918,DSM 28401,CIP 110708

@ref 20215

Last LPSN update 2026-02-09 11:23:54

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lacticaseibacillus

Species Lacticaseibacillus songhuajiangensis

Full scientific name Lacticaseibacillus songhuajiangensis (Gu et al. 2013) Zheng et al. 2020

Synonyms (1)

Lactobacillus songhuajiangensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
31160	positive	3 µm	0.9 µm	rod-shaped
67771				rod-shaped
67771	positive
122677	positive			rod-shaped

Colony morphology

62927

Incubation period1 day

Pigmentation

31160

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
41612	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
21000	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
122677	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21000	positive	growth	30	mesophilic
31160	positive	optimum	37	mesophilic
41612	positive	growth	30	mesophilic
62927	positive	growth	37	mesophilic
67770	positive	growth	28	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31160	positive	optimum	4	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
21000	microaerophile
31160	facultative anaerobe
62927	microaerophile
67771	microaerophile

Spore formation

@ref	Spore formation
31160
67771

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31160	NaCl	positive	growth	5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
31160	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	+	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
31160	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
31160	28260 ChEBI	galactose	+	carbon source
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
31160	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
31160	17716 ChEBI	lactose	+	carbon source
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
31160	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
31160	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
31160	506227 ChEBI	N-acetylglucosamine	+	carbon source
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
31160	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
31160	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
21000	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	-	-	+/-	-	+	+	+	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Food

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
67771	From traditional sourdough		Heilongjiang province	China	CHN	Asia
21000	traditional sourdough		Heilongjiang province	China	CHN	Asia
62927	Sourdough	2010-06-01	Heilongjiang province	China	CHN	Asia
67770	Traditional sourdough		Heilongjiang Province	China	CHN	Asia
122677	Traditional sourdough		Heilongjiang Province, China	China	CHN	Asia	2011-01-03

Taxonmaps

69479

Global distribution of 16S sequence HF679038 (>99% sequence identity) for Lacticaseibacillus songhuajiangensis subclade from Microbeatlas

Aquatic Samples	45
Soil Samples	55
Animal Samples	566
Plant Samples	50
Total Samples	716

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21000	1	Risk group (German classification)
122677	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM394602v1 assembly for Lacticaseibacillus songhuajiangensis 7-19	contig	GCA_003946025	1296539.3	2881703511	1296539	58.29

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21000	Lactobacillus songhuajiangensis partial 16S rRNA gene, type strain 7-19T	HF679038	1448		1296539

GC content

@ref	GC-content (mol%)	Method
21000	53.2
67770	53.2	thermal denaturation, midpoint method (Tm)
67770	52.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lacticaseibacillus songhuajiangensis 7-19
NCBI: GCA_003946025

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	66.30	no
125439	motility	BacteriaNetⓘ	no	52.90	no
125439	gram_stain	BacteriaNetⓘ	positive	80.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	89.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus mudanjiangensis sp. nov., Lactobacillus songhuajiangensis sp. nov. and Lactobacillus nenjiangensis sp. nov., isolated from Chinese traditional pickle and sourdough.	Gu CT, Li CY, Yang LJ, Huo GC	Int J Syst Evol Microbiol	10.1099/ijs.0.054296-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21000	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28401
#27488	IJSEM 4698 2013 ( DOI 10.1099/ijs.0.054296-0 , PubMed 23950151 )
#31160	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27488
#41612	; Curators of the CIP;
#62927	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62990
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122677	Collection of Institut Pasteur ; Curators of the CIP; CIP 110708
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lacticaseibacillus songhuajiangensis (KCTC 21025, DSM 28401, CCUG 62990)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003946025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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