Strain identifier

BacDive ID: 24140

Type strain: Yes

Species: Lacticaseibacillus songhuajiangensis

Strain Designation: 7-19

Strain history: CIP <- 2014, LMG <- 2011, 2012, C. Gu, Northeast Agric. Univ., Heilongjiang Province, China: strain 7-19

NCBI tax ID(s): 1296539 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 21000

BacDive-ID: 24140

DSM-Number: 28401

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped

description: Lacticaseibacillus songhuajiangensis 7-19 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from From traditional sourdough.

NCBI tax id

  • NCBI tax id: 1296539
  • Matching level: species

strain history

@refhistory
21000<- CCUG; CCUG 62990 <- C. T. Gu, Northeast Agricultural Univ., Harbin, China; 7-19
67770LMG 27191 <-- C. T. Gu; Northeast Agric. Univ., China; 7-19.
67771<- CCUG <- Chuntao Gu, Northeast Agricultural Univ., Harbin, China, 7-19
122677CIP <- 2014, LMG <- 2011, 2012, C. Gu, Northeast Agric. Univ., Heilongjiang Province, China: strain 7-19

doi: 10.13145/bacdive24140.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lacticaseibacillus
  • species: Lacticaseibacillus songhuajiangensis
  • full scientific name: Lacticaseibacillus songhuajiangensis (Gu et al. 2013) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus songhuajiangensis

@ref: 21000

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lacticaseibacillus

species: Lacticaseibacillus songhuajiangensis

full scientific name: Lacticaseibacillus songhuajiangensis (Gu et al. 2013) Zheng et al. 2020

strain designation: 7-19

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31160positive3 µm0.9 µmrod-shapedno
67771rod-shapedno
67771positive
122677positiverod-shapedno

colony morphology

  • @ref: 62927
  • incubation period: 1 day

pigmentation

  • @ref: 31160
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41612MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
21000MRS MEDIUM (DSMZ Medium 11)yesName: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled waterhttps://mediadive.dsmz.de/medium/11
122677CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
21000positivegrowth30mesophilic
31160positiveoptimum37mesophilic
41612positivegrowth30mesophilic
62927positivegrowth37mesophilic
67770positivegrowth28mesophilic
67771positivegrowth30mesophilic

culture pH

  • @ref: 31160
  • ability: positive
  • type: optimum
  • pH: 4
  • PH range: acidophile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
21000microaerophile
31160facultative anaerobe
62927microaerophile
67771microaerophile

spore formation

@refspore formation
31160no
67771no

halophily

  • @ref: 31160
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3116017057cellobiose+carbon source
3116028757fructose+carbon source
3116028260galactose+carbon source
3116017234glucose+carbon source
3116017716lactose+carbon source
3116017306maltose+carbon source
3116037684mannose+carbon source
31160506227N-acetylglucosamine+carbon source
3116017992sucrose+carbon source
3116027082trehalose+carbon source
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose+builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
21000----------++++--------+--+/--+++-++---------+-------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
67771From traditional sourdoughHeilongjiang provinceChinaCHNAsia
21000traditional sourdoughHeilongjiang provinceChinaCHNAsia
62927SourdoughHeilongjiang provinceChinaCHNAsia2010-06-01
67770Traditional sourdoughHeilongjiang ProvinceChinaCHNAsia
122677Traditional sourdoughHeilongjiang Province, ChinaChinaCHNAsia2011-01-03

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Food

taxonmaps

  • @ref: 69479
  • File name: preview.99_42218.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_1999;97_24252;98_30680;99_42218&stattab=map
  • Last taxonomy: Lacticaseibacillus songhuajiangensis subclade
  • 16S sequence: HF679038
  • Sequence Identity:
  • Total samples: 716
  • soil counts: 55
  • aquatic counts: 45
  • animal counts: 566
  • plant counts: 50

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
210001Risk group (German classification)
1226771Risk group (French classification)

Sequence information

16S sequences

  • @ref: 21000
  • description: Lactobacillus songhuajiangensis partial 16S rRNA gene, type strain 7-19T
  • accession: HF679038
  • length: 1448
  • database: ena
  • NCBI tax ID: 1296539

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lacticaseibacillus songhuajiangensis 7-192881703511draftimg1296539
67770Lacticaseibacillus songhuajiangensis 7-19GCA_003946025contigncbi1296539

GC content

@refGC-contentmethod
2100053.2
6777053.2thermal denaturation, midpoint method (Tm)
6777052.7genome sequence analysis

External links

@ref: 21000

culture collection no.: KCTC 21025, DSM 28401, CCUG 62990, LMG 27191, NCIMB 14832, JCM 30918, CIP 110708

straininfo link

  • @ref: 88098
  • straininfo: 381216

literature

  • topic: Phylogeny
  • Pubmed-ID: 23950151
  • title: Lactobacillus mudanjiangensis sp. nov., Lactobacillus songhuajiangensis sp. nov. and Lactobacillus nenjiangensis sp. nov., isolated from Chinese traditional pickle and sourdough.
  • authors: Gu CT, Li CY, Yang LJ, Huo GC
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.054296-0
  • year: 2013
  • mesh: Bacterial Typing Techniques, Base Composition, Bread/microbiology, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Genes, Bacterial, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vegetables/microbiology
  • topic2: Biotechnology

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21000Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28401Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28401)
31160Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172748828776041
41612Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/30515
62927Curators of the CCUGhttps://www.ccug.se/strain?id=62990Culture Collection University of Gothenburg (CCUG) (CCUG 62990)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
88098Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID381216.1
122677Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110708Collection of Institut Pasteur (CIP 110708)