Name: Klenkia brasiliensis Tü 6233
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 24063

Type strain:

Species: Klenkia brasiliensis

Strain Designation: Tü 6233

Culture col. no.: DSM 44526, CECT 8402, JCM 31698

Strain history: CECT 8402 <-- DSM 44526 <-- H. P. Fiedler; Univ. Tübingen, Germany; Tü 6233.

NCBI tax ID(s): 333142 (species)

SI-ID 298040

DSM 44526, CECT 8402

Special Collections

DSMZ
JCM

Section

Klenkia brasiliensis Tü 6233 is a Gram-positive bacterium that was isolated from soil.

Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Geodermatophilales*
	Family	*Geodermatophilaceae*
	Genus	*Klenkia*
	Species	**Klenkia brasiliensis**
	Full Scientific Name (LPSN)	Klenkia brasiliensis (Bertazzo et al. 2014) Montero-Calasanz et al. 2018

Synonym

Geodermatophilus brasiliensis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #11733]

Culture medium

HICKEY-TRESNER-AGAR (DSMZ Medium 658)

[Ref.: #11733]

Culture medium growth

[Ref.: #11733]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #11733]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #11733]

Culture medium growth

[Ref.: #11733]

Culture medium link

Medium recipe at MediaDive

[Ref.: #11733]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11733]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11733]	Sample type/isolated from	soil
[Ref.: #11733]	Geographic location (country and/or sea, region)	São Paulo, São José do Rio Preto (20° 46' 39'' S 49° 21' 35'' W; 530 m above mean sea level)
[Ref.: #11733]	Country	Brazil
[Ref.: #11733]	Country ISO 3 Code	BRA
[Ref.: #11733]	Continent	Middle and South America
[Ref.: #11733]	Geographic location	-20.7775°/-49.3597°

[Ref.: #67770]	Sample type/isolated from	Soil in São José do Rio Preto
[Ref.: #67770]	Geographic location (country and/or sea, region)	São Paulo
[Ref.: #67770]	Country	Brazil
[Ref.: #67770]	Country ISO 3 Code	BRA
[Ref.: #67770]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ029102 (>99% sequence identity) for Klenkia brasiliensis from Microbeatlas

Aquatic Samples	50
Soil Samples	116
Animal Samples	226
Plant Samples	63
Total Samples	455

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11733]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11733]	Klenkia brasiliensis strain Tu 6233 16S ribosomal RNA gene, partial sequence	DQ029102	1492	GenBank ENA	333142 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Klenkia brasiliensis DSM 44526	GCA_900100695	contig	GenBank ENA	333142 tax ID
[Ref.: #66792]	Klenkia brasiliensis strain DSM 44526	333142.6	wgs	PATRIC	333142 tax ID	*
[Ref.: #66792]	Klenkia brasiliensis DSM 44526	2602042031	draft	JGI IMG/M	333142 tax ID	*

[Ref.: #11733]	GC-content	75.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	74.8 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Klenkia brasiliensis strain DSM 44526 PATRIC: 333142.6
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	86.855	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.582	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	55.59	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.687	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	59.5	no

Availability in culture collections External links

[Ref.: #11733]

Culture collection no.

DSM 44526, CECT 8402, JCM 31698

[Ref.: #88034]

SI-ID 298040

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Geodermatophilus brasiliensis sp. nov., isolated from Brazilian soil.	Bertazzo M, Montero-Calasanz MDC, Martinez-Garcia M, Sproer C, Schumann P, Kroppenstedt RM, Stackebrandt E, Klenk HP, Fiedler HP	Int J Syst Evol Microbiol	10.1099/ijs.0.062844-0	2014	*

References

#11733

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44526

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#88034

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID298040.1 )

* These data were automatically processed and therefore are not curated

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Klenkia brasiliensis strain DSM 44526

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