Strain identifier
BacDive ID: 24063
Type strain: 
Species: Klenkia brasiliensis
Strain Designation: Tü 6233
Strain history: CECT 8402 <-- DSM 44526 <-- H. P. Fiedler; Univ. Tübingen, Germany; Tü 6233.
NCBI tax ID(s): 333142 (species)
version 9.1 (current version)
General
@ref: 11733
BacDive-ID: 24063
DSM-Number: 44526
keywords: genome sequence, 16S sequence, Bacteria, Gram-positive
description: Klenkia brasiliensis Tü 6233 is a Gram-positive bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 333142
- Matching level: species
strain history
| @ref | history |
|---|---|
| 11733 | <- H. P. Fiedler, Univ. Tübingen; Tü6233 |
| 67770 | CECT 8402 <-- DSM 44526 <-- H. P. Fiedler; Univ. Tübingen, Germany; Tü 6233. |
doi: 10.13145/bacdive24063.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Geodermatophilales
- family: Geodermatophilaceae
- genus: Klenkia
- species: Klenkia brasiliensis
- full scientific name: Klenkia brasiliensis (Bertazzo et al. 2014) Montero-Calasanz et al. 2018
synonyms
- @ref: 20215
- synonym: Geodermatophilus brasiliensis
@ref: 11733
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Geodermatophilaceae
genus: Klenkia
species: Klenkia brasiliensis
full scientific name: Klenkia brasiliensis (Bertazzo et al. 2014) Montero-Calasanz et al. 2018
strain designation: Tü 6233
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11733 | HICKEY-TRESNER-AGAR (DSMZ Medium 658) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium658.pdf | |
| 11733 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 11733 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 11733 | soil | São Paulo, São José do Rio Preto (20° 46' 39'' S 49° 21' 35'' W; 530 m above mean sea level) | Brazil | BRA | Middle and South America | -20.7775 | -49.3597 |
| 67770 | Soil in São José do Rio Preto | São Paulo | Brazil | BRA | Middle and South America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_159959.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_2889;97_3550;98_13951;99_159959&stattab=map
- Last taxonomy: Klenkia brasiliensis
- 16S sequence: DQ029102
- Sequence Identity:
- Total samples: 455
- soil counts: 116
- aquatic counts: 50
- animal counts: 226
- plant counts: 63
Safety information
risk assessment
- @ref: 11733
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 11733
- description: Klenkia brasiliensis strain Tu 6233 16S ribosomal RNA gene, partial sequence
- accession: DQ029102
- length: 1492
- database: nuccore
- NCBI tax ID: 333142
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Klenkia brasiliensis strain DSM 44526 | 333142.6 | wgs | patric | 333142 |
| 66792 | Klenkia brasiliensis DSM 44526 | 2602042031 | draft | img | 333142 |
| 67770 | Klenkia brasiliensis DSM 44526 | GCA_900100695 | contig | ncbi | 333142 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 11733 | 75.4 | high performance liquid chromatography (HPLC) |
| 67770 | 74.8 | genome sequence analysis |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 86.855 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.582 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 55.59 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.687 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 59.5 | no |
External links
@ref: 11733
culture collection no.: DSM 44526, CECT 8402, JCM 31698
straininfo link
- @ref: 88034
- straininfo: 298040
literature
- topic: Phylogeny
- Pubmed-ID: 24871776
- title: Geodermatophilus brasiliensis sp. nov., isolated from Brazilian soil.
- authors: Bertazzo M, Montero-Calasanz MDC, Martinez-Garcia M, Sproer C, Schumann P, Kroppenstedt RM, Stackebrandt E, Klenk HP, Fiedler HP
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.062844-0
- year: 2014
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Brazil, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 11733 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44526) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44526 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 88034 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID298040.1 | StrainInfo: A central database for resolving microbial strain identifiers |