Name: Pectobacterium aroidearum Ec106
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23936

Type strain:

Species: Pectobacterium aroidearum

Strain Designation: Ec106

Culture col. no.: DSM 27693, ICMP 1522, LMG 2417, NCPPB 929, SCRI 109

Strain history: <- S. Nabhan, Institut für Pflanzenkrankheiten und Pflanzenschutz, Leibniz Universität Hannover <- Scottish Crop Research Institute, Dundee; SCRI 109 <- B. Ma et al.; Ec106

NCBI tax ID(s): 1201031 (species)

SI-ID 13651

LMG 2417, ICMP 1522, NCPPB 929, PDDCC 1522, CFBP 8168

Section

Pectobacterium aroidearum Ec106 is a facultative anaerobe, mesophilic, Gram-negative plant pathogen that was isolated from Zantedeschia aethiopica.

Gram-negative
rod-shaped
facultative anaerobe
mesophilic
plant pathogen
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Pectobacteriaceae*
	Genus	*Pectobacterium*
	Species	**Pectobacterium aroidearum**
	Full Scientific Name (LPSN)	Pectobacterium aroidearum Nabhan et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30857]	Gram stain	negative

[Ref.: #30857]	Cell shape	rod-shaped

[Ref.: #30857]

Pigment production

yes

Multimedia content

[Ref.: #20721]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20721]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #20721]

Culture medium growth

[Ref.: #20721]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20721]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20721]			growth	28 °C
[Ref.: #30857]			optimum	37 °C

[Ref.: #20721]	Temperature range	mesophilic
[Ref.: #30857]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30857]

Oxygen tolerance

facultative anaerobe

[Ref.: #30857]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30857]	alanine ChEBI	+	carbon source
[Ref.: #30857]	aspartate ChEBI	+	carbon source
[Ref.: #30857]	cellobiose ChEBI	+	carbon source
[Ref.: #30857]	galactonate ChEBI	+	carbon source
[Ref.: #30857]	glucosamine ChEBI	+	carbon source
[Ref.: #30857]	glucuronamide ChEBI	+	carbon source
[Ref.: #30857]	glycine ChEBI	+	carbon source
[Ref.: #30857]	glycogen ChEBI	+	carbon source
[Ref.: #30857]	L-alaninamide ChEBI	+	carbon source
[Ref.: #30857]	lactate ChEBI	+	carbon source
[Ref.: #30857]	maltose ChEBI	+	carbon source
[Ref.: #30857]	melibiose ChEBI	+	carbon source
[Ref.: #30857]	raffinose ChEBI	+	carbon source
[Ref.: #30857]	serine ChEBI	+	carbon source
[Ref.: #30857]	tween 40 ChEBI	+	carbon source
[Ref.: #30857]	tween 80 ChEBI	+	carbon source
[Ref.: #30857]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20721]	Sample type/isolated from	Zantedeschia aethiopica
[Ref.: #20721]	Host species	Zantedeschia aethiopica
[Ref.: #20721]	Country	South Africa
[Ref.: #20721]	Country ISO 3 Code	ZAF
[Ref.: #20721]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20721]	Pathogenicity (plant)	yes
[Ref.: #20721]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20721]	Pectobacterium aroidearum strain SCRI 109 16S ribosomal RNA gene, partial sequence	JN600323	1530	ENA	1201031 tax ID

[Ref.: #30857]

GC-content

50.2 mol%

Availability in culture collections External links

[Ref.: #20721]

Culture collection no.

DSM 27693, ICMP 1522, LMG 2417, NCPPB 929, SCRI 109

[Ref.: #87935]

SI-ID 13651

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Pectobacterium aroidearum sp. nov., a soft rot pathogen with preference for monocotyledonous plants.	Nabhan S, De Boer SH, Maiss E, Wydra K	Int J Syst Evol Microbiol	10.1099/ijs.0.046011-0	2012	*
	First report of Pectobacterium aroidearum causing bacterial soft rot of carrot in Taiwan.	Tang WQ, Chang CY, Lee YJ, Chu CC	Plant Dis	10.1094/PDIS-08-20-1824-PDN	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20721

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27693

#30857

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27187 (see below)

#87935

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13651.1 )

#27187

IJSEM 2520 2013 ( DOI 10.1099/ijs.0.046011-0 , PubMed 23223819 )

* These data were automatically processed and therefore are not curated

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