Name: Photorhabdus heterorhabditis SF41
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 23937

Type strain:

Species: Photorhabdus heterorhabditis

Strain Designation: SF41

Culture col. no.: DSM 25263, ATCC BAA-2479, LMG 29524

Strain history: <- T. Ferreira, Stellenbosch Univ., Conservation Ecol. and Entomology Dept., South Africa; SF41

NCBI tax ID(s): 880156 (species)

SI-ID 399545

DSM 25263

Other strains from Photorhabdus heterorhabditis

P. heterorhabditis SF783, DSM 26380, LMG 28118

Section

Photorhabdus heterorhabditis SF41 is a motile animal pathogen that was isolated from entomopathogenic nematode Heterorhabditis zealandica from undisturbed soil.

motile
animal pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Morganellaceae*
	Genus	*Photorhabdus*
	Species	**Photorhabdus heterorhabditis**
	Full Scientific Name (LPSN)	Photorhabdus heterorhabditis Ferreira et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.957

[Ref.: #69480]	Motility	yes Confidence in %98.682

Multimedia content

[Ref.: #20733]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20733]

Culture medium

REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)

[Ref.: #20733]

Culture medium growth

[Ref.: #20733]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20733]

Culture medium composition

expand / minimize

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.468

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #20733]	24993	-	-	-	+	+	+	+	+	+	-	+	-	+	+	+	+	-	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20733]	Sample type/isolated from	entomopathogenic nematode Heterorhabditis zealandica from undisturbed soil
[Ref.: #20733]	Host species	Heterorhabditis zealandica
[Ref.: #20733]	Geographic location (country and/or sea, region)	Northern Cape province, Patensie, Baviaanskloof (33° 41' 28'' S 24° 35' 23'' E)
[Ref.: #20733]	Country	South Africa
[Ref.: #20733]	Country ISO 3 Code	ZAF
[Ref.: #20733]	Continent	Africa
[Ref.: #20733]	Geographic location	-33.6911°/24.4167°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Invertebrates (Other)	#Nematoda

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ142626 (>99% sequence identity) for Photorhabdus from Microbeatlas

Aquatic Samples	27
Soil Samples	2
Animal Samples	43
Plant Samples	8
Total Samples	80

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20733]	Pathogenicity (animal)	yes
[Ref.: #20733]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20733]	Photorhabdus heterorhabditis strain SF41 16S ribosomal RNA gene, partial sequence	HQ142626	1450	ENA	880156 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Photorhabdus heterorhabditis SF41	GCA_018448905	scaffold	GenBank	880156 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Photorhabdus heterorhabditis SF41 NCBI: GCA_018448905.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Photorhabdus heterorhabditis SF41 NCBI: GCA_018448905.1
[Ref.: #69480]	motile	yes	85.913	no
[Ref.: #69480]	flagellated	yes	52.348	no
[Ref.: #69480]	gram-positive	no	98.314	no
[Ref.: #69480]	anaerobic	no	98.081	no
[Ref.: #69480]	aerobic	yes	87.149	no
[Ref.: #69480]	halophile	no	88.673	no
[Ref.: #69480]	spore-forming	no	94.365	no
[Ref.: #69480]	thermophile	no	98.005	no
[Ref.: #69480]	glucose-util	yes	92.975	yes
[Ref.: #69480]	glucose-ferment	yes	82.442	yes

Availability in culture collections External links

[Ref.: #20733]

Culture collection no.

DSM 25263, ATCC BAA-2479, LMG 29524

[Ref.: #87936]

SI-ID 399545

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Photorhabdus heterorhabditis sp. nov., a symbiont of the entomopathogenic nematode Heterorhabditis zealandica.	Ferreira T, van Reenen CA, Endo A, Tailliez P, Pages S, Sproer C, Malan AP, Dicks LMT	Int J Syst Evol Microbiol	10.1099/ijs.0.059840-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20733

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25263

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87936

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399545.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Photorhabdus heterorhabditis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF