Name: Acidovorax wautersii NF 1078
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23868

Type strain:

Species: Acidovorax wautersii

Strain Designation: NF 1078

Culture col. no.: DSM 27981, CCUG 62584, LMG 26971

Strain history: <- LMG <- G. Wauters, Université de Louvain; NF 1078

NCBI tax ID(s): 1177982 (species)

SI-ID 379777

LMG 26971, CCUG 62584, DSM 27981

Special Collections

Section

Acidovorax wautersii NF 1078 is an aerobe, Gram-negative, motile human pathogen that was isolated from human blood.

Gram-negative
motile
rod-shaped
aerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Acidovorax*
	Species	**Acidovorax wautersii**
	Full Scientific Name (LPSN)	Acidovorax wautersii Vaneechoutte et al. 2013

Synonym

Paracidovorax wautersii

Information on morphological and physiological properties Morphology

[Ref.: #30860]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.5

[Ref.: #30860]	Cell length	3 µm

[Ref.: #30860]	Cell width	0.45 µm

[Ref.: #30860]	Cell shape	rod-shaped

[Ref.: #30860]	Motility	yes

[Ref.: #30860]

Pigment production

Multimedia content

[Ref.: #20236]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #20236]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #20236]

Culture medium growth

[Ref.: #20236]

Culture medium link

Medium recipe at MediaDive

[Ref.: #20236]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #20236]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30860]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #30860]	arabinose ChEBI	+	carbon source
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #30860]	galactose ChEBI	+	carbon source
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #30860]	glucose ChEBI	+	carbon source
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #30860]	lactose ChEBI	+	carbon source
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #30860]	mannitol ChEBI	+	carbon source
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #30860]	rhamnose ChEBI	+	carbon source
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #30860]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #30860]	catalase	+	1.11.1.6
[Ref.: #30860]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68368]	cytochrome oxidase	+	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #30860]	urease	+	3.5.1.5
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #20236]	16640	-	-	-	-	+	-	+	-	-	-	-	+	-	-	-	-	-	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #20236]	Sample type/isolated from	human blood
[Ref.: #20236]	Geographic location (country and/or sea, region)	Brussels
[Ref.: #20236]	Country	Belgium
[Ref.: #20236]	Country ISO 3 Code	BEL
[Ref.: #20236]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #20236]	Pathogenicity (human)	yes, in single cases
[Ref.: #20236]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20236]	Acidovorax wautersii strain NF1078 16S ribosomal RNA gene, partial sequence	JQ946365	1502	GenBank ENA	1177982 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paracidovorax wautersii DSM 27981	GCA_900113035	scaffold	GenBank ENA	1177982 tax ID	*
[Ref.: #66792]	Acidovorax wautersii strain DSM 27981	1177982.3	wgs	PATRIC	1177982 tax ID	*
[Ref.: #66792]	Acidovorax wautersii DSM 27981	2634166330	draft	JGI IMG/M	1177982 tax ID	*

[Ref.: #20236]

GC-content

67.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidovorax wautersii DSM 27981 NCBI: GCA_900113035.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.727	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.692	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.061	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.776	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	83.744	no

Availability in culture collections External links

[Ref.: #20236]

Culture collection no.

DSM 27981, CCUG 62584, LMG 26971

[Ref.: #87880]

SI-ID 379777

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidovorax antarcticus sp. nov., isolated from a soil sample of Collins Glacier front, Antarctica.	Xu Q, Peng X, Wang Y, Lu L, Zhang Y, Qin K, Liu J, Peng F	Int J Syst Evol Microbiol	10.1099/ijsem.0.004744	2021	*
Phylogeny	Description of Acidovorax wautersii sp. nov. to accommodate clinical isolates and an environmental isolate, most closely related to Acidovorax avenae.	Vaneechoutte M, Janssens M, Avesani V, Delmee M, Deschaght P	Int J Syst Evol Microbiol	10.1099/ijs.0.046102-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20236

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27981

#30860

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27190 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#87880

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID379777.1 )

#27190

IJSEM 2203 2013 ( DOI 10.1099/ijs.0.046102-0 , PubMed 23148096 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Acidovorax wautersii in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Acidovorax wautersii DSM 27981

Change proposal

Change proposal