Strain identifier

BacDive ID: 23868

Type strain: Yes

Species: Acidovorax wautersii

Strain Designation: NF 1078

Strain history: <- LMG <- G. Wauters, Université de Louvain; NF 1078

NCBI tax ID(s): 1177982 (species)

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General

@ref: 20236

BacDive-ID: 23868

DSM-Number: 27981

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, human pathogen

description: Acidovorax wautersii NF 1078 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from human blood.

NCBI tax id

  • NCBI tax id: 1177982
  • Matching level: species

strain history

  • @ref: 20236
  • history: <- LMG <- G. Wauters, Université de Louvain; NF 1078

doi: 10.13145/bacdive23868.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Acidovorax
  • species: Acidovorax wautersii
  • full scientific name: Acidovorax wautersii Vaneechoutte et al. 2013

  • synonyms

    • @ref: 20215
    • synonym: Paracidovorax wautersii

@ref: 20236

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Acidovorax

species: Acidovorax wautersii

full scientific name: Acidovorax wautersii Vaneechoutte et al. 2013

strain designation: NF 1078

type strain: yes

Morphology

cell morphology

  • @ref: 30860
  • gram stain: negative
  • cell length: 3 µm
  • cell width: 0.45 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 30860
  • production: no

multimedia

  • @ref: 20236
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_27981.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 20236
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 20236
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 30860
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3086022599arabinose+carbon source
3086028260galactose+carbon source
3086017234glucose+carbon source
3086017716lactose+carbon source
3086029864mannitol+carbon source
3086026546rhamnose+carbon source
3086018222xylose+carbon source
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
30860catalase+1.11.1.6
30860cytochrome oxidase+1.9.3.1
30860urease+3.5.1.5
68368cytochrome oxidase+1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
20236----+-+----+-----+--+

Isolation, sampling and environmental information

isolation

  • @ref: 20236
  • sample type: human blood
  • geographic location: Brussels
  • country: Belgium
  • origin.country: BEL
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood

Safety information

risk assessment

  • @ref: 20236
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20236
  • description: Acidovorax wautersii strain NF1078 16S ribosomal RNA gene, partial sequence
  • accession: JQ946365
  • length: 1502
  • database: ena
  • NCBI tax ID: 1177982

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paracidovorax wautersii DSM 27981GCA_900113035scaffoldncbi1177982
66792Acidovorax wautersii strain DSM 279811177982.3wgspatric1177982
66792Acidovorax wautersii DSM 279812634166330draftimg1177982

GC content

  • @ref: 20236
  • GC-content: 67.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes88.972yes
flagellatedyes61.323no
gram-positiveno98.548yes
anaerobicno98.488yes
aerobicyes94.759yes
halophileno95.988no
spore-formingno94.929no
glucose-fermentno85.39yes
thermophileno99.006yes
glucose-utilyes72.687yes

External links

@ref: 20236

culture collection no.: DSM 27981, CCUG 62584, LMG 26971

straininfo link

  • @ref: 87880
  • straininfo: 379777

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23148096Description of Acidovorax wautersii sp. nov. to accommodate clinical isolates and an environmental isolate, most closely related to Acidovorax avenae.Vaneechoutte M, Janssens M, Avesani V, Delmee M, Deschaght PInt J Syst Evol Microbiol10.1099/ijs.0.046102-02012Bacterial Typing Techniques, Base Composition, Comamonadaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Genotype, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny33724913Acidovorax antarcticus sp. nov., isolated from a soil sample of Collins Glacier front, Antarctica.Xu Q, Peng X, Wang Y, Lu L, Zhang Y, Qin K, Liu J, Peng FInt J Syst Evol Microbiol10.1099/ijsem.0.0047442021

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20236Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27981Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27981)
30860Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172719028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
87880Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID379777.1