Name: Cellulomonas carbonis T26
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2375

Type strain:

Species: Cellulomonas carbonis

Strain Designation: T26

Culture col. no.: DSM 26485, CCTCC AB 2010450, CGMCC 1.10786, KCTC 19824, JCM 19664, NBRC 110798

Strain history: CGMCC 1.10786 <-- Z. Shi et al. T26.

NCBI tax ID(s): 1386092 (species)

SI-ID 400957

DSM 26485

Section

Cellulomonas carbonis T26 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from subsurface soil of coal mine.

Gram-positive
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Cellulomonadaceae*
	Genus	*Cellulomonas*
	Species	**Cellulomonas carbonis**
	Full Scientific Name (LPSN)	Cellulomonas carbonis Shi et al. 2012

Synonym

"Actinotalea carbonis"

Information on morphological and physiological properties Morphology

[Ref.: #30392]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #30392]	Cell length	2.2 µm

[Ref.: #30392]	Cell width	0.65 µm

[Ref.: #30392]	Cell shape	rod-shaped

[Ref.: #30392]	Motility	yes

[Ref.: #30392]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18245]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #18245]

Culture medium growth

[Ref.: #18245]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18245]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18245]	growth	28 °C
[Ref.: #30392]	growth	04-45 °C
[Ref.: #30392]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #18245]	Temperature range	mesophilic
[Ref.: #30392]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30392]			optimum	7
[Ref.: #30392]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30392]

Oxygen tolerance

aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.987

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30392]		NaCl		growth	0-7	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30392]	arabinose ChEBI	+	carbon source
[Ref.: #30392]	esculin ChEBI	+	hydrolysis
[Ref.: #30392]	fructose ChEBI	+	carbon source
[Ref.: #30392]	galactose ChEBI	+	carbon source
[Ref.: #30392]	gluconate ChEBI	+	carbon source
[Ref.: #30392]	glucose ChEBI	+	carbon source
[Ref.: #30392]	glycogen ChEBI	+	carbon source
[Ref.: #30392]	lactose ChEBI	+	carbon source
[Ref.: #30392]	maltose ChEBI	+	carbon source
[Ref.: #30392]	mannose ChEBI	+	carbon source
[Ref.: #30392]	melibiose ChEBI	+	carbon source
[Ref.: #30392]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #30392]	nitrate ChEBI	+	reduction
[Ref.: #30392]	raffinose ChEBI	+	carbon source
[Ref.: #30392]	salicin ChEBI	+	carbon source
[Ref.: #30392]	sorbitol ChEBI	+	carbon source
[Ref.: #30392]	sucrose ChEBI	+	carbon source
[Ref.: #30392]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #30392]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #30392]	acid phosphatase	+	3.1.3.2
[Ref.: #30392]	alpha-galactosidase	+	3.2.1.22
[Ref.: #30392]	catalase	+	1.11.1.6
[Ref.: #30392]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18245]	Sample type/isolated from	subsurface soil of coal mine
[Ref.: #18245]	Geographic location (country and/or sea, region)	Xijin District, Tianjin
[Ref.: #18245]	Country	China
[Ref.: #18245]	Country ISO 3 Code	CHN
[Ref.: #18245]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Coal mine soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tianjin
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ702749 (>99% sequence identity) for Cellulomonas from Microbeatlas

Aquatic Samples	93
Soil Samples	46
Animal Samples	104
Plant Samples	13
Total Samples	256

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18245]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18245]	Cellulomonas carbonis T26 16S ribosomal RNA gene, partial sequence	HQ702749	1442	ENA	947969 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cellulomonas carbonis T26	GCA_000767175	contig	GenBank	947969 tax ID
[Ref.: #66792]	Cellulomonas carbonis CGMCC 1.10786	GCA_014636275	scaffold	GenBank	1386092 tax ID	*
[Ref.: #66792]	Cellulomonas carbonis T26	947969.5	wgs	PATRIC	947969 tax ID	*
[Ref.: #66792]	Cellulomonas carbonis strain CGMCC 1.10786	1386092.3	wgs	PATRIC	1386092 tax ID	*
[Ref.: #66792]	Cellulomonas carbonis T26	2636415627	draft	JGI IMG/M	947969 tax ID	*

[Ref.: #18245]	GC-content	74.4 mol%
[Ref.: #67770]	GC-content	74.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	73 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cellulomonas carbonis CGMCC 1.10786 NCBI: GCA_014636275.1
[Ref.: #69481]	spore-forming	yes	74	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cellulomonas carbonis CGMCC 1.10786 NCBI: GCA_014636275.1
[Ref.: #69480]	flagellated	no	89.266	no
[Ref.: #69480]	gram-positive	yes	93.501	no
[Ref.: #69480]	anaerobic	no	99.219	yes
[Ref.: #69480]	aerobic	yes	88.961	yes
[Ref.: #69480]	halophile	no	87.888	no
[Ref.: #69480]	spore-forming	no	84.687	no
[Ref.: #69480]	glucose-util	yes	84.806	yes
[Ref.: #69480]	thermophile	no	96.994	yes
[Ref.: #69480]	motile	yes	86.452	yes
[Ref.: #69480]	glucose-ferment	no	75.454	no

Availability in culture collections External links

[Ref.: #18245]

Culture collection no.

DSM 26485, CCTCC AB 2010450, CGMCC 1.10786, KCTC 19824, JCM 19664, NBRC 110798

[Ref.: #71930]

SI-ID 400957

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinotalea solisilvae sp. nov., isolated from forest soil and emended description of the genus Actinotalea.	Yan ZF, Lin P, Li CT, Kook M, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002584	2018	*
Phylogeny	Cellulomonas carbonis sp. nov., isolated from coal mine soil.	Shi Z, Luo G, Wang G	Int J Syst Evol Microbiol	10.1099/ijs.0.034934-0	2011	*

References

#18245

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26485

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30392

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26729 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71930

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400957.1 )

#26729

IJSEM 2004 2012 ( DOI 10.1099/ijs.0.034934-0 , PubMed 22021576 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Cellulomonas carbonis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Cellulomonas carbonis CGMCC 1.10786

Cellulomonas carbonis CGMCC 1.10786

Change proposal

Change proposal