Cellulomonas phragmiteti (DSM 22512, JCM 19545, NBRC 110785)

Name: Cellulomonas phragmiteti (DSM 22512, JCM 19545, NBRC 110785)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2374

Type strain

Strain Designation KB23

Culture col. no. DSM 22512 JCM 19545 NBRC 110785 NCAIM B002303 KB23 1 more

NCBI tax ID(s) 478780

Special Collections DSMZ JCM Wink compendium

History DSMZ <- A. K. Borsodi, Eötvös Loránd Univ. Budapest, Hungary; KB23 <- A. Rusznyák JCM <-- DSM 22512 <-- A. K. Borsodi KB23 <-- A. Rusznyák.

Links

Cellulomonas phragmiteti KB23 is a bacterium that was isolated from reed periphyton in a shallow soda pond.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400944

NCAIM B002303,JCM 19545,NBRC 110785,DSM 22512

@ref 20215

Last LPSN update 2026-05-29 08:25:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Cellulomonadaceae

Genus Cellulomonas

Species Cellulomonas phragmiteti

Full scientific name Cellulomonas phragmiteti Rusznyák et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	98.766
125438		90

Colony morphology

@ref	Colony color	Medium used
69225	Dahlia yellow (1033)	ISP 3
69225	Dahlia yellow (1033)	ISP 4
69225	Daffodil yellow (1007)	ISP 5
69225	Melon yellow (1028)	suter with tyrosine
69225	Saffron yellow (1017)	ISP 7
69225	Zinc yellow (1018)	suter without tyrosine

Multicellular morphology

@ref	Complex name	Medium name
69225	Aerial mycelium	ISP 2
69225	Aerial mycelium	ISP 3
69225	Aerial mycelium	ISP 4
69225	Aerial mycelium	ISP 5
69225	Aerial mycelium	ISP 6
69225	Aerial mycelium	ISP 7
69225	Aerial mycelium	suter with tyrosine
69225	Aerial mycelium	suter without tyrosine

Pigmentation

@ref	Production	Name
69225		melanin pigment
69225		soluble pigment

Multimedia

@ref:	69225
multimedia content:	DSM_22512_image3.jpeg
multimedia.multimedia content:	DSM_22512_image3.jpeg
caption:	Plates (GYM, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69225
multimedia content:	DSM_22512_image4.jpeg
multimedia.multimedia content:	DSM_22512_image4.jpeg
caption:	Plates (GYM, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16374	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16374	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.879

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69225	NaCl	positive	growth	0-5 %

Murein

@ref	Murein short key	Type
16374	A21.04	A4ß L-Orn-D-Asp

Observation

67770

Observationquinones: MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69225	22599 ChEBI	arabinose	+	growth
69225	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	+	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	+	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
69225	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
69225	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	+	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
69225	37684 ChEBI	mannose	+	growth
69225	17268 ChEBI	myo-inositol	-	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69225	16634 ChEBI	raffinose	+	growth
69225	26546 ChEBI	rhamnose	-	growth
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
69225	17992 ChEBI	sucrose	+	growth
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69225	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API Coryne
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69225	-	-	-	-	-	+	+	+	+	-	-	not determinedn.d.	+	-	+	+	+	-	+	+	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69225	not determinedn.d.	-	+/-	+/-	-	+	+/-	+/-	-	+/-	-	+/-	+	+	-	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Pond (small)
#Host	#Other	-
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Alkaline	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
16374	reed (Phragmites australis) periphyton in a shallow soda pond	Phragmites australis	Budapest, Kiskunság National Park	Hungary	HUN	Europe
67770	Phragmites australis-associated biofilm originating from a soda pond in Kiskunság National Park	Phragmites australis		Hungary	HUN	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16374	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1686277v1 assembly for Cellulomonas phragmiteti NBRC 110785	contig	GCA_016862775	478780.3	3002919007	478780	64.21

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16374	Cellulomonas sp. KB23 partial 16S rRNA gene, strain KB23	AM902253	453		478780

GC content

@ref	GC-content (mol%)	Method
16374	74.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1686277v1 assembly for Cellulomonas phragmiteti NBRC 110785
NCBI: GCA_016862775

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.88	no
125439	gram_stain	BacteriaNetⓘ	positive	98.77	no
125439	motility	BacteriaNetⓘ	no	76.97	no
125439	spore_formation	BacteriaNetⓘ	no	65.69	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cellulomonas phragmiteti strain NBRC 110785
PATRIC: 478780.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.14	no
125438	anaerobic	anaerobicⓘ	no	93.71	no
125438	spore-forming	spore-formingⓘ	no	55.65	no
125438	aerobic	aerobicⓘ	yes	74.48	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	90.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cellulomonas phragmiteti sp. nov., a cellulolytic bacterium isolated from reed (Phragmites australis) periphyton in a shallow soda pond.	Rusznyak A, Toth EM, Schumann P, Sproer C, Makk J, Szabo G, Vladar P, Marialigeti K, Borsodi AK	Int J Syst Evol Microbiol	10.1099/ijs.0.022608-0	2010

References

#16374	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22512
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69225	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cellulomonas phragmiteti (DSM 22512, JCM 19545, NBRC 110785)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Murein

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016862775

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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