Aeromonas caviae (DSM 30188, ATCC 15467, IFO 13282)

Name: Aeromonas caviae (DSM 30188, ATCC 15467, IFO 13282)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 237

Type strain

Strain Designation 256, 544

Culture col. no. DSM 30188 ATCC 15467 IFO 13282 NBRC 13282 CCUG 25938 11 more

NCBI tax ID(s) 648

Special Collections DSMZ CCUG JCM KCTC CIP

History <- ATCC <- R.H.W. Schubert; 256 <- J.P. Crawford <- H. Pivnick and L.R. Sabina Y. Kosako 69 <-- M. Popoff 544 <-- ATCC 15467 <-- R. Schubert 256 <-- J. P. Crawford <-- H. Pivnick and L. R. Sabina. CIP <- 1976, M.Y. Popoff, Inst. Pasteur, Paris, France: strain 544 <- ATCC <- R. Schubert: strain 256, Aeromonas hydrophila subsp. anaerogenes <- H. Pivnick

Links

Aeromonas caviae 256 is a facultative anaerobe, Gram-negative, motile human pathogen that has multiple antibiotic resistances and was isolated from used oil emulsions.

antibiotic resistance Gram-negative motile rod-shaped facultative anaerobe human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 364

LMG 3755,ATCC 15467,CCUG 25938,DSM 30188,IAM 12334,IFO 13282,JCM 1043,CECT 4221,CCRC 11554,KCTC 1653,NBRC 13282,CCM 7231,NCIMB 13740,BCRC 11554,KCTC 12487,CIP 76.15

@ref 20215

Last LPSN update 2026-02-09 11:17:49

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Aeromonadales

Family Aeromonadaceae

Genus Aeromonas

Species Aeromonas caviae

Full scientific name Aeromonas caviae (Scherago 1936) Popoff 1984

Synonyms (5)

Aeromonas punctata
Aeromonas hydrophila subsp. anaerogenes
"Pseudomonas caviae"
Aeromonas punctata subsp. caviae
"Bacillus punctatus"

BacDive ID	Other strains from **Aeromonas caviae** (40)	Type strain
253	A. caviae B-968, DSM 7323, ATCC 15468, NRRL B-968, ... (type strain)
100248	A. caviae STI08310(IMET), IFO 14303, IMET 8310
23539	A. caviae WS 41333, DSM 30025
130141	A. caviae AecaKS148, KS148, DSM 29415
135773	A. caviae Coallier, CIP 67.24
137504	A. caviae CIP 67.12
138059	A. caviae CIP 102629
141250	A. caviae CCUG 409, NCTC 10362, JCM 2526, LMG 12662
142857	A. caviae CCUG 15383
143441	A. caviae CCUG 19144
143878	A. caviae CCUG 21694
143879	A. caviae CCUG 21695
143880	A. caviae CCUG 21696
143925	A. caviae CCUG 21864 B
144667	A. caviae CCUG 26139
144815	A. caviae CCUG 26636
146989	A. caviae CCUG 32605
147375	A. caviae CCUG 33484
149381	A. caviae CCUG 37616
151272	A. caviae CCUG 43595
151598	A. caviae CCUG 44411
151687	A. caviae CCUG 44636
151874	A. caviae CCUG 45103
152543	A. caviae CCUG 47031
153252	A. caviae CCUG 48892
153871	A. caviae CCUG 51455
155422	A. caviae CCUG 57693
155961	A. caviae CCUG 59790
156098	A. caviae CCUG 60365
156426	A. caviae CCUG 61686
156774	A. caviae CCUG 65067
163260	A. caviae JCM 2362
163261	A. caviae JCM 2363
163262	A. caviae JCM 2364
164884	A. caviae JCM 3965
164898	A. caviae JCM 3979, ATCC 13137, CDC 2071-58, ICPB 4302, ...
164912	A. caviae JCM 3993
164919	A. caviae JCM 4000
165118	A. caviae JCM 5081
165119	A. caviae JCM 5082

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
120007	negative	rod-shaped
125438	negative		99.994
125439	negative		98.5

Multimedia

@ref:	9191
multimedia content:	DSM_30188.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_30188.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9191	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)	Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
34199	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120007	CIP Medium 3	Medium recipe at CIP
120007	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
9191	positive	growth	30
34199	positive	growth	30
67770	positive	growth	30
120007	positive	growth	10-41
120007	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
120007	facultative anaerobe
125439	obligate anaerobe	98.6

Antibiotic susceptibility testing

	Test 1
@ref	9191
Medium	Mueller-Hinton Agar
Manual annotation	1
	Inhibition zone diameter in mm
Amikacin 30µg (disc)	24
Ampicillin 10µg (disc)	0
Aztreonam 30µg (disc)	42
Bacitracin 10Unit	0
Cefalotin 30µg (disc)	10
Cefazolin 30µg (disc)	14
Cefotaxime 30µg (disc)	40
Ceftriaxone 30µg (disc)	36
Chloramphenicol 30µg (disc)	40
Clindamycin 10µg (disc)	0
Colistin 10µg (disc)	16
Doxycycline 30µg (disc)	30
Erythromycin 15µg (disc)	20-22
Fosfomycin 50µg (disc)	38
Gentamycin 10µg (disc)
Imipenem 10µg (disc)	38
Kanamycin 30µg (disc)	34-36
Lincomycin 15µg (disc)	0
Linezolid 10µg (disc)	10
Mezlocillin 30µg (disc)	28
Moxifloxacin 5µg (disc)	34
Neomycin 30µg (disc)	18-20
Nitrofurantoin 100µg (disc)	32
Norfloxacin 10µg (disc)	38
Nystatin 100Unit	0
Ofloxacin 5µg (disc)	38
Oxacillin 5µg (disc)	0
Penicillin G 6µg (disc)	0
Pipemidic acid 20µg (disc)	32
Piperacillin/Tazobactam 40µg (disc)	32
Polymyxin B 300Unit	16
Quinupristin/Dalfopristin 15µg (disc)	10
Teicoplanin 30µg (disc)	0
Tetracycline 30µg (disc)	32-34
Ticarcillin 75µg (disc)	14
Vancomycin 30µg (disc)	0

Spore formation

@ref	Spore formation	Confidence
125438		92.684
125439		98.9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68374	29016 ChEBI	arginine	+	hydrolysis	from API ID32E
68374	17057 ChEBI	cellobiose	+	builds acid from	from API ID32E
120007	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68374	18333 ChEBI	D-arabitol	-	builds acid from	from API ID32E
68374	18024 ChEBI	D-galacturonic acid	-	builds acid from	from API ID32E
68374	17634 ChEBI	D-glucose	+	builds acid from	from API ID32E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68374	16899 ChEBI	D-mannitol	+	builds acid from	from API ID32E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
120007	4853 ChEBI	esculin	+	hydrolysis
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
120007	17234 ChEBI	glucose	+	fermentation
68374	30849 ChEBI	L-arabinose	+	builds acid from	from API ID32E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68374	62345 ChEBI	L-rhamnose	-	builds acid from	from API ID32E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
120007	17716 ChEBI	lactose	-	fermentation
68374	25094 ChEBI	lysine	-	degradation	from API ID32E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68374	15792 ChEBI	malonate	-	assimilation	from API ID32E
120007	15792 ChEBI	malonate	-	assimilation
68374	17306 ChEBI	maltose	+	builds acid from	from API ID32E
120007	29864 ChEBI	mannitol	+	fermentation
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68374	17268 ChEBI	myo-inositol	-	builds acid from	from API ID32E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
120007	17632 ChEBI	nitrate	+	reduction
120007	17632 ChEBI	nitrate	+	respiration
120007	16301 ChEBI	nitrite	-	reduction
68374	18257 ChEBI	ornithine	-	degradation	from API ID32E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68374		Potassium 5-ketogluconate	-	builds acid from	from API ID32E
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
120007	132112 ChEBI	sodium thiosulfate	-	builds gas from
68374	30911 ChEBI	sorbitol	-	builds acid from	from API ID32E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68374	17992 ChEBI	sucrose	+	builds acid from	from API ID32E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68374	27082 ChEBI	trehalose	+	builds acid from	from API ID32E
68374	27897 ChEBI	tryptophan	+	energy source	from API ID32E
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68374	16199 ChEBI	urea	-	hydrolysis	from API ID32E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.
9191	28971	Ampicillin	10 µg (disc)	from Antibiotic test
9191	28669	Bacitracin	10 Unit	from Antibiotic test
9191	3745	Clindamycin	10 µg (disc)	from Antibiotic test
9191	6472	Lincomycin	15 µg (disc)	from Antibiotic test
9191	7660	Nystatin	100 Unit	from Antibiotic test
9191	7809	Oxacillin	5 µg (disc)	from Antibiotic test
9191	18208	Penicillin G	6 µg (disc)	from Antibiotic test
9191	29687	Teicoplanin	30 µg (disc)	from Antibiotic test
9191	28001	Vancomycin	30 µg (disc)	from Antibiotic test

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68374	35581 ChEBI	indole	from API ID32E
120007	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
120007	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-			from API 20E
120007	17234 ChEBI	glucose		+
68374	35581 ChEBI	indole			+	from API ID32E
68368	35581 ChEBI	indole			+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120007	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68374	alpha-galactosidase	-	3.2.1.22	from API ID32E
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68374	alpha-glucosidase	-	3.2.1.20	from API ID32E
68374	alpha-maltosidase	+		from API ID32E
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68374	arginine dihydrolase	+	3.5.3.6	from API ID32E
68382	beta-galactosidase	+	3.2.1.23	from API zym
120007	beta-galactosidase	+	3.2.1.23
68374	beta-galactosidase	+	3.2.1.23	from API ID32E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68374	beta-glucosidase	+	3.2.1.21	from API ID32E
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68374	beta-glucuronidase	-	3.2.1.31	from API ID32E
120007	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120007	gelatinase	-
68368	gelatinase	+		from API 20E
68374	L-aspartate arylamidase	-	3.4.11.21	from API ID32E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68374	lipase	+		from API ID32E
68382	lipase (C 14)	+		from API zym
120007	lysine decarboxylase	-	4.1.1.18
68374	lysine decarboxylase	-	4.1.1.18	from API ID32E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
120007	ornithine decarboxylase	-	4.1.1.17
68374	ornithine decarboxylase	-	4.1.1.17	from API ID32E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
120007	oxidase	+
120007	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
120007	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
120007	urease	-	3.5.1.5
68374	urease	-	3.5.1.5	from API ID32E
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

Fatty acid profile

Metadata FA analysis

@ref

48301

Fatty acid	Percentage	ECL
C16:1 ω7c	30.2	15.819
C16:0	21.5	16
C18:1 ω7c /12t/9t	12.4	17.824
C12:0	5.7	12
C14:0 3OH/C16:1 ISO I	4.6	15.485
C14:0	3.3	14
C17:1 ω9c ISO	3.1	16.416
C15:0 ISO	2.5	14.621
C15:0	2.4	15
C17:0 iso	1.9	16.629
C18:2 ω6,9c/C18:0 ANTE	1.8	17.724
C17:0	1.8	17
C17:1 ω8c	1.7	16.792
C13:0 iso	1.4	12.612
C15:0 ISO 3OH	1.4	16.135
unknown 14.503	0.9	14.503
C18:0	0.5	18
C17:1 ω6c	0.5	16.862
C18:1 ω9c	0.5	17.769
C13:0	0.4	13
C12:0 ALDE ?	0.4	10.915
C16:0 anteiso	0.3	15.717
C13:0 ISO 2OH	0.2	13.814
C15:1 ISO F	0.2	14.414
Unidentified	0.2	13.944
Unidentified	0.2	18.08
unknown 11.541	0.2	11.541
C15:1 ω8c	0.2	14.792

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
48301	+	-	-	-	-	-	-	-	+	-	+	+	+	-	-	-	+	-	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
9191	+	+	-	-	-	-	-	-	+	-	+	+	+	-	-	-	+	-	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
9191	+	+	-	-	-	-	-	-	+	-	+	+	+	-	-	-	+	-	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120007	-	+	+	+	+	+	+	+	+	-	+	-	-	+	+	+	+	+	-	-

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
48301	-	+	-	-	-	-	-	+	-	+	+	+	-	-	-	-	+	-	+	+	+	+	-	-	-	+	-	-	+	-	+	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
120007	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	+	-	+	-	+	-	+	+	+	+	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	-	+	+	-	+	-	-	-	-	-	-	+	+	+	-	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Oil reservoir

Isolation

@ref	Sample type
9191	used oil emulsions
48301	Used-oil emulsion
67770	Used oil emulsion
120007	Used oil-emulsions

Taxonmaps

69479

Global distribution of 16S sequence X60409 (>99% sequence identity) for Aeromonas from Microbeatlas

Aquatic Samples	400
Soil Samples	45
Animal Samples	595
Plant Samples	47
Total Samples	1087

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
9191			2	Risk group (German classification) According to TRBA 466
120007			1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	PRJEB7046 assembly for Aeromonas caviae CECT 4221	scaffold	GCA_000820265	648.22	2648501863	648	4.56

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Aeromonas caviae gene for 16S rRNA, partial sequence	AB235956	1018	346635
20218	Aeromonas hydrophila 16S rRNA	D11170	186	644
20218	Aeromonas hydrophila 16S rRNA	D11219	182	644
20218	Aeromonas hydrophila 16S rRNA	D11268	200	644
20218	Aeromonas caviae 16S rRNA gene, strain ATCC 15467	X60409	1502	648
67770	Aeromonas hydrophila subsp. anaerogenes partial 16S rRNA gene, type strain CECT 4221T	FR870443	1494	648
67770	Aeromonas caviae gene for 16S ribosomal RNA, partial cds, strain: JCM 1043	LC050172	1467	648
124043	Aeromonas caviae strain CECT 4221-1 16S ribosomal RNA gene, partial sequence.	MG015902	440	648
124043	Aeromonas caviae strain CECT 4221 16S ribosomal RNA gene, partial sequence.	PV596668	1202	648
124043	Aeromonas caviae strain CECT 4221-2 16S ribosomal RNA gene, partial sequence.	MG015903	489	648

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aeromonas caviae CECT 4221
NCBI: GCA_000820265

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.90	no
125439	motility	BacteriaNetⓘ	yes	70.60	no
125439	gram_stain	BacteriaNetⓘ	negative	98.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	98.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aeromonas caviae CECT 4221
PATRIC: 648.22

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.99	no
125438	anaerobic	anaerobicⓘ	no	96.64	yes
125438	aerobic	aerobicⓘ	no	68.59	yes
125438	spore-forming	spore-formingⓘ	no	92.68	no
125438	thermophilic	thermophileⓘ	no	99.50	no
125438	flagellated	motile2+ⓘ	yes	88.14	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Comparison of conventional, nested, and real-time quantitative PCR for diagnosis of scrub typhus.	Kim DM, Park G, Kim HS, Lee JY, Neupane GP, Graves S, Stenos J.	J Clin Microbiol	10.1128/jcm.01216-09	2011
	Enumeration of Vibrio cholerae O1 in Bangladesh waters by fluorescent-antibody direct viable count.	Brayton PR, Tamplin ML, Huq A, Colwell RR.	Appl Environ Microbiol	10.1128/aem.53.12.2862-2865.1987	1987
Enzymology	Direct detection of Salmonella spp. in estuaries by using a DNA probe.	Knight IT, Shults S, Kaspar CW, Colwell RR.	Appl Environ Microbiol	10.1128/aem.56.4.1059-1066.1990	1990
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
Enzymology	Cystitis caused by Aeromonas caviae.	Al-Benwan K, Abbott S, Janda JM, Huys G, Huys G, Albert MJ.	J Clin Microbiol	10.1128/jcm.00480-07	2007
	Chemical Compositions of the Volatile Oils and Antibacterial Screening of Solvent Extract from Downy Lavender.	Park CH, Park YE, Yeo HJ, Chun SW, Baskar TB, Lim SS, Park SU.	Foods	10.3390/foods8040132	2019
	Comparison of conventional, nested, and real-time PCR assays for rapid and accurate detection of Vibrio vulnificus.	Kim HS, Kim DM, Neupane GP, Lee YM, Yang NW, Jang SJ, Jung SI, Park KH, Park HR, Lee CS, Lee SH.	J Clin Microbiol	10.1128/jcm.00027-08	2008
Metabolism	Prokaryotic viperins produce diverse antiviral molecules.	Bernheim A, Millman A, Ofir G, Meitav G, Avraham C, Avraham C, Shomar H, Rosenberg MM, Tal N, Melamed S, Amitai G, Sorek R.	Nature	10.1038/s41586-020-2762-2	2021
Phylogeny	Ribosomal multi-operon diversity: an original perspective on the genus Aeromonas.	Roger F, Lamy B, Jumas-Bilak E, Kodjo A, colBVH study group, Marchandin H.	PLoS One	10.1371/journal.pone.0046268	2012
	Aeromonas caviae subsp. aquatica subsp. nov., a New Multidrug-Resistant Subspecies Isolated from a Drinking Water Storage Tank.	Moreira VH, Berbert LC, Adesoji AT, Bianco K, Cavalcante JJV, Pellegrino FLPC, Albano RM, Clementino MM, Cardoso AM.	Microorganisms	10.3390/microorganisms13040897	2025

References

#9191	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30188
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34199	; Curators of the CIP;
#48301	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 25938
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68374	Automatically annotated from API ID32E .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120007	Collection of Institut Pasteur ; Curators of the CIP; CIP 76.15
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aeromonas caviae (DSM 30188, ATCC 15467, IFO 13282)

Name and taxonomic classification

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