Strain identifier

BacDive ID: 237

Type strain: No

Species: Aeromonas caviae

Strain Designation: 256, 544

Strain history: CIP <- 1976, M.Y. Popoff, Inst. Pasteur, Paris, France: strain 544 <- ATCC <- R. Schubert: strain 256, Aeromonas hydrophila subsp. anaerogenes <- H. Pivnick

NCBI tax ID(s): 648 (species)

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General

@ref: 9191

BacDive-ID: 237

DSM-Number: 30188

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile, antibiotic resistance, human pathogen

description: Aeromonas caviae 256 is a facultative anaerobe, mesophilic, motile human pathogen that has multiple antibiotic resistances and was isolated from used oil emulsions.

NCBI tax id

  • NCBI tax id: 648
  • Matching level: species

strain history

@refhistory
9191<- ATCC <- R.H.W. Schubert; 256 <- J.P. Crawford <- H. Pivnick and L.R. Sabina
67770Y. Kosako 69 <-- M. Popoff 544 <-- ATCC 15467 <-- R. Schubert 256 <-- J. P. Crawford <-- H. Pivnick and L. R. Sabina.
120007CIP <- 1976, M.Y. Popoff, Inst. Pasteur, Paris, France: strain 544 <- ATCC <- R. Schubert: strain 256, Aeromonas hydrophila subsp. anaerogenes <- H. Pivnick

doi: 10.13145/bacdive237.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Aeromonadales
  • family: Aeromonadaceae
  • genus: Aeromonas
  • species: Aeromonas caviae
  • full scientific name: Aeromonas caviae (Scherago 1936) Popoff 1984

  • synonyms

    @refsynonym
    20215Aeromonas punctata
    20215Aeromonas punctata subsp. caviae
    20215Bacillus punctatus
    20215Aeromonas hydrophila subsp. anaerogenes
    20215Pseudomonas caviae

@ref: 9191

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Aeromonadales

family: Aeromonadaceae

genus: Aeromonas

species: Aeromonas caviae

full scientific name: Aeromonas caviae (ex Eddy 1962) Popoff 1984

strain designation: 256, 544

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.714
6948099.993negative
120007yesnegativerod-shaped

multimedia

  • @ref: 9191
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_30188.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9191REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)yeshttps://mediadive.dsmz.de/medium/1aName: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
34199MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120007CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
120007CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
9191positivegrowth30mesophilic
34199positivegrowth30mesophilic
67770positivegrowth30mesophilic
120007positivegrowth10-41
120007nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 120007
  • oxygen tolerance: facultative anaerobe

antibiogram

  • @ref: 9191
  • medium: Mueller-Hinton Agar
  • Penicillin G: 0
  • oxacillin: 0
  • ampicillin: 0
  • ticarcillin: 14
  • mezlocillin: 28
  • cefalotin: 10
  • cefazolin: 14
  • cefotaxime: 40
  • aztreonam: 42
  • imipenem: 38
  • tetracycline: 32-34
  • chloramphenicol: 40
  • gentamycin: 22
  • amikacin: 24
  • vancomycin: 0
  • erythromycin: 20-22
  • lincomycin: 0
  • ofloxacin: 38
  • norfloxacin: 38
  • colistin: 16
  • pipemidic acid: 32
  • nitrofurantoin: 32
  • bacitracin: 0
  • polymyxin b: 16
  • kanamycin: 34-36
  • neomycin: 18-20
  • doxycycline: 30
  • ceftriaxone: 36
  • clindamycin: 0
  • fosfomycin: 38
  • moxifloxacin: 34
  • linezolid: 10
  • nystatin: 0
  • quinupristin/dalfopristin: 10
  • teicoplanin: 0
  • piperacillin/tazobactam: 32

spore formation

@refspore formationconfidence
69481no100
69480no99.986

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
12000729864mannitol+fermentation
12000716947citrate-carbon source
1200074853esculin+hydrolysis
12000717234glucose+fermentation
12000717716lactose-fermentation
12000717632nitrate+reduction
12000716301nitrite-reduction
12000715792malonate-assimilation
120007132112sodium thiosulfate-builds gas from
12000717632nitrate+respiration
6837418257ornithine-degradation
6837429016arginine+hydrolysis
6837425094lysine-degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol+builds acid from
6837417306maltose+builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan+energy source
6837417634D-glucose+builds acid from
6837417992sucrose+builds acid from
6837430849L-arabinose+builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose+builds acid from
6837430911sorbitol-builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleyes
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno
12000735581indoleyes

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6837435581indole+
6836815688acetoin-
6836835581indole+
12000715688acetoin-
12000717234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase+3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)+
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase+
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase+
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase+3.5.3.6
68374ornithine decarboxylase-4.1.1.17
68368cytochrome oxidase+1.9.3.1
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368beta-galactosidase+3.2.1.23
120007oxidase+
120007beta-galactosidase+3.2.1.23
120007alcohol dehydrogenase+1.1.1.1
120007gelatinase-
120007catalase+1.11.1.6
120007lysine decarboxylase-4.1.1.18
120007ornithine decarboxylase-4.1.1.17
120007phenylalanine ammonia-lyase-4.3.1.24
120007tryptophan deaminase-
120007urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    48301C12:05.712
    48301C13:00.413
    48301C14:03.314
    48301C15:02.415
    48301C16:021.516
    48301C17:01.817
    48301C18:00.518
    48301C12:0 ALDE ?0.410.915
    48301C13:0 iso1.412.612
    48301C13:0 ISO 2OH0.213.814
    48301C14:0 3OH/C16:1 ISO I4.615.485
    48301C15:0 ISO2.514.621
    48301C15:0 ISO 3OH1.416.135
    48301C15:1 ISO F0.214.414
    48301C15:1 ω8c0.214.792
    48301C16:0 anteiso0.315.717
    48301C16:1 ω7c30.215.819
    48301C17:0 iso1.916.629
    48301C17:1 ω6c0.516.862
    48301C17:1 ω8c1.716.792
    48301C17:1 ω9c ISO3.116.416
    48301C18:1 ω7c /12t/9t12.417.824
    48301C18:1 ω9c0.517.769
    48301C18:2 ω6,9c/C18:0 ANTE1.817.724
    48301Unidentified0.213.944
    48301Unidentified0.218.08
    48301unknown 11.5410.211.541
    48301unknown 14.5030.914.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120007-++++++++-+--+++++--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
48301+-------+-+++---+-+++
9191++------+-+++---+-+++
9191++------+-+++---+-+++

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
48301-+-----+-+++----+-++++---+--+-+-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120007+++++--+-+++-+-+-++++----------+-+---------------+---------++-----------+--++--++-+------+++-++----

Isolation, sampling and environmental information

isolation

@refsample type
9191used oil emulsions
48301Used-oil emulsion
67770Used oil emulsion
120007Used oil-emulsions

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Industrial
  • Cat3: #Oil reservoir

taxonmaps

  • @ref: 69479
  • File name: preview.99_19.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11;96_15;97_15;98_18;99_19&stattab=map
  • Last taxonomy: Aeromonas
  • 16S sequence: X60409
  • Sequence Identity:
  • Total samples: 1087
  • soil counts: 45
  • aquatic counts: 400
  • animal counts: 595
  • plant counts: 47

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
9191yesyes2Risk group (German classification)
1200071Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aeromonas sp. ATCC 15467 gene for 16S rRNA, partial sequenceAB2359561018ena346635
20218Aeromonas hydrophila 16S rRNAD11170186ena644
20218Aeromonas hydrophila 16S rRNAD11219182ena644
20218Aeromonas hydrophila 16S rRNAD11268200ena644
20218Aeromonas caviae 16S rRNA gene, strain ATCC 15467X604091502ena648
67770Aeromonas hydrophila subsp. anaerogenes partial 16S rRNA gene, type strain CECT 4221TFR8704431494ena648
67770Aeromonas caviae gene for 16S ribosomal RNA, partial cds, strain: JCM 1043LC0501721467ena648

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromonas caviae CECT 4221648.22wgspatric648
66792Aeromonas caviae CECT 42212648501863draftimg648
67770Aeromonas caviae CECT 4221GCA_000820265scaffoldncbi648

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.909no
anaerobicno98.274no
halophileno89.85no
spore-formingno96.053no
glucose-utilyes90.391no
thermophileno99.604yes
flagellatedyes91.181no
aerobicyes89.65no
motileyes89.745no
glucose-fermentyes86.961yes

External links

@ref: 9191

culture collection no.: DSM 30188, ATCC 15467, IFO 13282, NBRC 13282, CCUG 25938, LMG 3755, CIP 76.15, JCM 1043, BCRC 11554, CCM 7231, CECT 4221, IAM 12334, KCTC 12487, NCIMB 13740

straininfo link

  • @ref: 69920
  • straininfo: 364

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9191Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30188)https://www.dsmz.de/collection/catalogue/details/culture/DSM-30188
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34199Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10784
48301Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 25938)https://www.ccug.se/strain?id=25938
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68374Automatically annotated from API ID32E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69920Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID364.1StrainInfo: A central database for resolving microbial strain identifiers
120007Curators of the CIPCollection of Institut Pasteur (CIP 76.15)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2076.15