Name: Microbispora siamensis DSM 45498
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23320

Type strain:

Species: Microbispora siamensis

Culture col. no.: DSM 45498, BCC 14407, NBRC 104113, JCM 17237

Strain history: BCC 14407 <-- V. Kitpreechavanich DMKUA 245.

NCBI tax ID(s): 564413 (species)

SI-ID 406776

DSM 45498

Special Collections

Section

Microbispora siamensis DSM 45498 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Microbispora*
	Species	**Microbispora siamensis**
	Full Scientific Name (LPSN)	Microbispora siamensis Boondaeng et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29255]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.378

[Ref.: #29255]	Motility	no

[Ref.: #29255]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19095]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #19095]

Culture medium growth

[Ref.: #19095]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19095]

Culture medium composition

expand / minimize

[Ref.: #19095]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #19095]

Culture medium growth

[Ref.: #19095]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19095]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19095]	growth	28 °C
[Ref.: #29255]	growth	25-50 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29255]	Oxygen tolerance	aerobe
[Ref.: #69480]	Oxygen tolerance	aerobe Confidence in %90.778

[Ref.: #29255]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %98

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29255]		NaCl		growth	0-2	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₂), MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29255]	arabinose ChEBI	+	carbon source
[Ref.: #29255]	citrate ChEBI	+	carbon source
[Ref.: #29255]	fructose ChEBI	+	carbon source
[Ref.: #29255]	galactose ChEBI	+	carbon source
[Ref.: #29255]	glucose ChEBI	+	carbon source
[Ref.: #29255]	malate ChEBI	+	carbon source
[Ref.: #29255]	mannitol ChEBI	+	carbon source
[Ref.: #29255]	mannose ChEBI	+	carbon source
[Ref.: #29255]	succinate ChEBI	+	carbon source
[Ref.: #29255]	sucrose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19095]	Sample type/isolated from	soil
[Ref.: #19095]	Country	Thailand
[Ref.: #19095]	Country ISO 3 Code	THA
[Ref.: #19095]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil in the Sakaerat Biosphere Reserve
[Ref.: #67770]	Geographic location (country and/or sea, region)	Nakhonratchasima
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19095]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19095]	Microbispora sp. DMKUA 245 16S ribosomal RNA gene, partial sequence	FJ199993	1494	GenBank ENA	564413 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbispora siamensis NBRC 104113	GCA_016863095	contig	GenBank ENA	564413 tax ID	*
[Ref.: #66792]	Microbispora siamensis strain NBRC 104113	564413.3	wgs	PATRIC	564413 tax ID	*

[Ref.: #19095]	GC-content	68 mol%
[Ref.: #67770]	GC-content	68 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbispora siamensis strain NBRC 104113 PATRIC: 564413.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	98	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbispora siamensis strain NBRC 104113 PATRIC: 564413.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.378	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.37	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	88.11	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.778	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	yes

Availability in culture collections External links

[Ref.: #19095]

Culture collection no.

DSM 45498, BCC 14407, NBRC 104113, JCM 17237

[Ref.: #87538]

SI-ID 406776

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbispora tritici sp. nov., a novel actinomycete isolated from a root of wheat (Triticum aestivum L.).	Han C, Zhao J, Yu B, Shi H, Zhang C, Guo X, Xiang W, Wang X	Antonie Van Leeuwenhoek	10.1007/s10482-019-01246-y	2019	*
Phylogeny	Microbispora triticiradicis sp. nov., a novel actinomycete isolated from the root of wheat (Triticum aestivum L.).	Han C, Tian Y, Zhao J, Yu Z, Jiang S, Guo X, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003040	2018	*
Phylogeny	Microbispora siamensis sp. nov., a thermotolerant actinomycete isolated from soil.	Boondaeng A, Ishida Y, Tamura T, Tokuyama S, Kitpreechavanich V	Int J Syst Evol Microbiol	10.1099/ijs.0.009613-0	2009	*

References

#19095

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45498

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29255

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25675 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#87538

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406776.1 )

#25675

IJSEM 3136 2009 ( DOI 10.1099/ijs.0.009613-0 , PubMed 19643881 )

* These data were automatically processed and therefore are not curated

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Microbispora siamensis strain NBRC 104113

Microbispora siamensis strain NBRC 104113

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