Name: Acrocarpospora phusangensis PS33-18
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23319

Type strain:

Species: Acrocarpospora phusangensis

Strain Designation: PS33-18

Culture col. no.: DSM 45867, BCC 46906, NBRC 108782

Strain history: <- C Suriyachadkun, BCC; BCC 46906 <- N. Niemhom; PS33-18

NCBI tax ID(s): 1070424 (species)

SI-ID 403245

DSM 45867

Special Collections

Section

When using BacDive for research please cite our paper

Acrocarpospora phusangensis PS33-18 is a mesophilic, Gram-positive bacterium that builds an aerial mycelium.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Acrocarpospora*
	Species	**Acrocarpospora phusangensis**
	Full Scientific Name (LPSN)	Acrocarpospora phusangensis Niemhom et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30863]	Gram stain	positive
[Ref.: #125439]	Gram stain	positive Confidence in %99.9

[Ref.: #125439]	Motility	no Confidence in %95.4

[Ref.: #69449]	Colony color	Ivory (1014)
[Ref.: #69449]	Cultivation medium used	ISP 4

[Ref.: #69449]	Colony color	Light ivory (1015)
[Ref.: #69449]	Cultivation medium used	ISP 3

[Ref.: #69449]	Colony color	Light ivory (1015)
[Ref.: #69449]	Cultivation medium used	ISP 5

[Ref.: #69449]	Colony color	Light ivory (1015)
[Ref.: #69449]	Cultivation medium used	ISP 7

[Ref.: #69449]	Colony color	Light ivory (1015), brown beige (1011)
[Ref.: #69449]	Cultivation medium used	suter with tyrosine

[Ref.: #69449]	Colony color	Light ivory (1015), olive yellow (1020)
[Ref.: #69449]	Cultivation medium used	suter without tyrosine

[Ref.: #69449]	Colony color	Sand yellow (1002)
[Ref.: #69449]	Cultivation medium used	ISP 2

[Ref.: #30863]	Pigment production	no
[Ref.: #69449]	Pigment production	no
[Ref.: #69449]	Pigment name	Melanin
[Ref.: #69449]	Pigment production	no
[Ref.: #69449]	Pigment name	soluble pigment

[Ref.: #69449]	Multicellular complex forming ability	no
[Ref.: #69449]	Multicellular complex name	Aerial mycelium
[Ref.: #69449]	Medium Name (multicellularity)	ISP 2

[Ref.: #69449]	Multicellular complex forming ability	yes
[Ref.: #69449]	Multicellular complex name	Aerial mycelium
[Ref.: #69449]	Multicellular complex color	Cream (9001)
[Ref.: #69449]	Medium Name (multicellularity)	ISP 3

[Ref.: #69449]	Multicellular complex forming ability	no
[Ref.: #69449]	Multicellular complex name	Aerial mycelium
[Ref.: #69449]	Medium Name (multicellularity)	ISP 4

[Ref.: #69449]	Multicellular complex forming ability	no
[Ref.: #69449]	Multicellular complex name	Aerial mycelium
[Ref.: #69449]	Medium Name (multicellularity)	ISP 5

[Ref.: #69449]	Multicellular complex forming ability	yes
[Ref.: #69449]	Multicellular complex name	Aerial mycelium
[Ref.: #69449]	Multicellular complex color	Cream (9001)
[Ref.: #69449]	Medium Name (multicellularity)	ISP 7

[Ref.: #69449]	Multicellular complex forming ability	no
[Ref.: #69449]	Multicellular complex name	Aerial mycelium
[Ref.: #69449]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69449]	Multicellular complex forming ability	no
[Ref.: #69449]	Multicellular complex name	Aerial mycelium
[Ref.: #69449]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69449]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69449]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69449]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69449]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19331]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #19331]

Culture medium growth

[Ref.: #19331]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19331]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #19331]

Culture medium growth

[Ref.: #19331]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19331]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19331]	growth	28 °C
[Ref.: #30863]	growth	25-30 °C
[Ref.: #30863]	optimum	27.5 °C

	pH	Kind of pH		pH
[Ref.: #30863]			growth	07-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

facultative anaerobe Confidence in %97.4

[Ref.: #125439]

Ability of spore formation

yes Confidence in %96.2

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30863]		NaCl		optimum	0-1	%
[Ref.: #69449]		NaCl		growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30863]	arabinose ChEBI	+	carbon source
[Ref.: #69449]	arabinose ChEBI	+/-	growth
[Ref.: #30863]	cellobiose ChEBI	+	carbon source
[Ref.: #69449]	cellulose ChEBI	+/-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #30863]	fructose ChEBI	+	carbon source
[Ref.: #69449]	fructose ChEBI	+	growth
[Ref.: #30863]	galactose ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #30863]	glucose ChEBI	+	carbon source
[Ref.: #69449]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69449]	inositol ChEBI	+	growth
[Ref.: #30863]	lactose ChEBI	+	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30863]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #30863]	mannitol ChEBI	+	carbon source
[Ref.: #69449]	mannose ChEBI	+	growth
[Ref.: #30863]	melibiose ChEBI	+	carbon source
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #30863]	raffinose ChEBI	+	carbon source
[Ref.: #69449]	raffinose ChEBI	+/-	growth
[Ref.: #30863]	rhamnose ChEBI	+	carbon source
[Ref.: #69449]	rhamnose ChEBI	+	growth
[Ref.: #30863]	sucrose ChEBI	+	carbon source
[Ref.: #69449]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69449]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69449]	3942	-	-	-	+	-	+	+	+	+	+	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69449]	6126	not determinedn.d.	+	+	-	-	+	+	-	-	-	+	+	-	+	-	+/-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19331]	Geographic location (country and/or sea, region)	Phayao
[Ref.: #19331]	Country	Thailand
[Ref.: #19331]	Country ISO 3 Code	THA
[Ref.: #19331]	Continent	Asia
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19331]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19331]	Acrocarpospora phusangensis gene for 16S ribosomal RNA, partial sequence	AB649124	1453	GenBank ENA	1070424 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acrocarpospora phusangensis NBRC 108782	GCA_016862995	contig	GenBank ENA	1070424 tax ID	*
[Ref.: #66792]	Acrocarpospora phusangensis strain NBRC 108782	1070424.3	wgs	PATRIC	1070424 tax ID	*

[Ref.: #19331]

GC-content

71 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acrocarpospora phusangensis strain NBRC 108782 PATRIC: 1070424.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	89.831	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	93.316	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	89.99	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	88.551	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.5	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	82	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acrocarpospora phusangensis NBRC 108782 NCBI: GCA_016862995
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	facultative anaerobe	97.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	95.4
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	96.2

Availability in culture collections External links

[Ref.: #19331]

Culture collection no.

DSM 45867, BCC 46906, NBRC 108782

[Ref.: #87537]

SI-ID 403245

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acrocarpospora phusangensis sp. nov., isolated from a temperate peat swamp forest soil.	Niemhom N, Suriyachadkun C, Tamura T, Thawai C	Int J Syst Evol Microbiol	10.1099/ijs.0.046227-0	2012	*
Phylogeny	Acrocarpospora catenulata sp. nov., a novel actinobacterium isolated from lake sediment.	Liu C, Guo Y, Li L, Li J, Wang L, Lin J, Wang X, Chu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.005526	2022	*

References

#19331

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45867

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30863

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27193 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69449

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#87537

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403245.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#27193

IJSEM 2174 2013 ( DOI 10.1099/ijs.0.046227-0 , PubMed 23125318 )

* These data were automatically processed and therefore are not curated

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Acrocarpospora phusangensis strain NBRC 108782

Acrocarpospora phusangensis NBRC 108782

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