Streptomyces chlorus (DSM 42079, CGMCC 4.5798, KACC 20902)

Name: Streptomyces chlorus (DSM 42079, CGMCC 4.5798, KACC 20902)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23318

Type strain

Strain Designation BK125

Culture col. no. DSM 42079 CGMCC 4.5798 KACC 20902 BK125 JCM 19672

NCBI tax ID(s) 887452

Special Collections DSMZ JCM Wink compendium Literature strains

History <- S.-W. Kwon, KACC; KACC 20902 CGMCC 4.5798 <-- B.-Y. Kim et al. BK125.

Links

Streptomyces chlorus BK125 is an aerobe, spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from hay meadow soil.

spore-forming Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405319

JCM 19672,DSM 42079

@ref 20215

Last LPSN update 2026-02-09 11:23:43

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces chlorus

Full scientific name Streptomyces chlorus Kim et al. 2013

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
30851	positive	0.7 µm	0.6 µm	rod-shaped

Colony morphology

@ref	Colony color	Medium used
69341	Brown beige (1011), ivory (1014)	ISP 6
69341	Beige (1001), brown beige (1011)	ISP 7
69341	Ivory (1014)	ISP 4
69341	Ivory (1014), brown beige (1011)	ISP 5
69341	Ivory (1014), khaki grey (7008)	ISP 3
69341	Ivory (1014), ochre yellow (1024)	suter without tyrosine
69341	Maize yellow (1006), sand yellow (1002)	suter with tyrosine
69341	Sand yellow (1002)	ISP 2

Multicellular morphology

@ref	Complex name	Complex color	Medium name
69341	Aerial mycelium		ISP 2
69341	Aerial mycelium		ISP 3
69341	Aerial mycelium		ISP 4
69341	Aerial mycelium		ISP 5
69341	Aerial mycelium		ISP 6
69341	Aerial mycelium		ISP 7
69341	Aerial mycelium	Oyster white (1013)	suter with tyrosine
69341	Aerial mycelium	Pebble grey (7032)	suter without tyrosine

Pigmentation

@ref	Color	Name
30851
69341		melanin pigment
69341	Brown beige (1011), sand yellow (1002)	soluble pigment

Multimedia

@ref:	19320
multimedia content:	DSM_42079.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_42079.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	69341
multimedia content:	DSM_42079_image3.jpeg
multimedia.multimedia content:	DSM_42079_image3.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69341
multimedia content:	DSM_42079_image4.jpeg
multimedia.multimedia content:	DSM_42079_image4.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
19320	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
19320	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water
19320	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
19320	positive	growth	28
30851	positive	growth	10-42
30851	positive	optimum	30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
30851	positive	optimum	7
30851	positive	growth	05-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

30851

Oxygen toleranceaerobe

Spore formation

30851

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69341	NaCl	positive	growth	0-5 %

Observation

@ref	Observation
30851	aggregates in chains
67770	quinones: MK-9(H₆), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69341	22599 ChEBI	arabinose	+	growth
69341	62968 ChEBI	cellulose	-	growth
30851	16947 ChEBI	citrate	+	carbon source
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
30851	4853 ChEBI	esculin	+	hydrolysis
69341	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
69341	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69341	17268 ChEBI	inositol	+	growth
30851	18403 ChEBI	L-arabitol	+	carbon source
30851	24996 ChEBI	lactate	+	carbon source
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
30851	25115 ChEBI	malate	+	carbon source
30851	17306 ChEBI	maltose	+	carbon source
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69341	37684 ChEBI	mannose	+	growth
30851	28053 ChEBI	melibiose	+	carbon source
30851	17632 ChEBI	nitrate	+	reduction
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
30851	17272 ChEBI	propionate	+	carbon source
30851	15361 ChEBI	pyruvate	+	carbon source
69341	16634 ChEBI	raffinose	-	growth
69341	26546 ChEBI	rhamnose	+	growth
30851	30911 ChEBI	sorbitol	+	carbon source
30851	30031 ChEBI	succinate	+	carbon source
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69341	17992 ChEBI	sucrose	+	growth
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69341	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
30851	catalase	+	1.11.1.6
68382	esterase (C 4)	+		from API zym
30851	gelatinase	+
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69341	+	+/-	-	+	-	-	+	-	+/-	-	+	not determinedn.d.	+	+/-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69341	not determinedn.d.	+	+	+/-	-	+	+/-	+/-	-	-	+	+	-	-	-	+	-	+/-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Meadow
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
19320	hay meadow soil	Northumberland, Cockle Park Experimental Farm, Palace Leas hay meadow plot 6	United Kingdom	GBR	Europe
67770	Soil from Palace Leas hay meadow plot 6 at Cockle Park Experimental Farm	Northumberland	United Kingdom	GBR	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
19320	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265588v1 assembly for Streptomyces chlorus CGMCC 4.5798	scaffold	GCA_042655885	887452	32.11

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
19320	Streptomyces chlorus partial 16S rRNA gene, strain BK125	FR692094	1460		887452

GC content

@ref	GC-content (mol%)	Method
19320	69.2	fluorimetric
30851	69.2
67770	69.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces chlorus sp. nov. and Streptomyces viridis sp. nov., isolated from soil.	Kim BY, Rong X, Zucchi TD, Huang Y, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.045906-0	2012

References

#19320	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42079
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27181	IJSEM 1728 2013 ( DOI 10.1099/ijs.0.045906-0 , PubMed 22922536 )
#30851	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27181
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69341	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces chlorus (DSM 42079, CGMCC 4.5798, KACC 20902)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042655885

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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