Name: Streptomyces shaanxiensis DSM 42094
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 23310

Type strain:

Species: Streptomyces shaanxiensis

Culture col. no.: DSM 42094, ACCC 41873, JCM 16925, CCNWHQ 0031, CCNWTJ 0031

Strain history: Y. B. Lin CCNWHQ 0031.

NCBI tax ID(s): 653357 (species)

SI-ID 407919

DSM 42094

Special Collections

Section

Streptomyces shaanxiensis DSM 42094 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from sewage irrigation area.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces shaanxiensis**
	Full Scientific Name (LPSN)	Streptomyces shaanxiensis Lin et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30146]	Gram stain	positive

[Ref.: #30146]

Pigment production

yes

Multimedia content

[Ref.: #19164]

Caption:

Medium 65 28°C

[Ref.: #19164]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #19164]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #19164]

Culture medium growth

[Ref.: #19164]

Culture medium link

Medium recipe at MediaDive

[Ref.: #19164]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #19164]	growth	28 °C
[Ref.: #30146]	growth	20-37 °C
[Ref.: #30146]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #30146]			optimum	7.5
[Ref.: #30146]			growth	05-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30146]

Oxygen tolerance

aerobe

[Ref.: #30146]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30146]		NaCl		growth	0-3	%
[Ref.: #30146]		NaCl		optimum	1	%

[Ref.: #67770]

Observation

quinones: MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30146]	fructose ChEBI	+	carbon source
[Ref.: #30146]	galactose ChEBI	+	carbon source
[Ref.: #30146]	glycerol ChEBI	+	carbon source
[Ref.: #30146]	lactose ChEBI	+	carbon source
[Ref.: #30146]	mannitol ChEBI	+	carbon source
[Ref.: #30146]	nitrate ChEBI	+	reduction
[Ref.: #30146]	sucrose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #30146]		hydrogen sulfide ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #19164]	Sample type/isolated from	sewage irrigation area
[Ref.: #19164]	Geographic location (country and/or sea, region)	Shaanxii province
[Ref.: #19164]	Country	China
[Ref.: #19164]	Country ISO 3 Code	CHN
[Ref.: #19164]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sewage irrigation area from Shaanxi Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ465151 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	18
Soil Samples	433
Animal Samples	71
Plant Samples	350
Total Samples	872

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #19164]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #19164]	Streptomyces shaanxiensis strain CCNWHQ 0031 16S ribosomal RNA gene, partial sequence	FJ465151	1445	GenBank ENA	653357 tax ID

[Ref.: #19164]	GC-content	70.7 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30146]	GC-content	70.7 mol%

Availability in culture collections External links

[Ref.: #19164]

Culture collection no.

DSM 42094, ACCC 41873, JCM 16925, CCNWHQ 0031, CCNWTJ 0031

[Ref.: #87528]

SI-ID 407919

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces cyaneochromogenes sp. nov., a blue pigment-producing actinomycete from manganese-contaminated soil.	Tang X, Zhao J, Li K, Chen Z, Sun Y, Gao J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003406	2019	*
Phylogeny	Streptomyces populi sp. nov., a novel endophytic actinobacterium isolated from stem of Populus adenopoda Maxim.	Wang Z, Jiang B, Li X, Gan L, Long X, Zhang Y, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002877	2018	*
Phylogeny	Streptomyces shaanxiensis sp. nov., a blue pigment-producing streptomycete from sewage irrigation soil.	Lin YB, Wang XY, Fang H, Ma YN, Tang J, Tang M, Wei GH	Int J Syst Evol Microbiol	10.1099/ijs.0.029959-0	2011	*

References

#19164

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42094

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30146

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26497 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#87528

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407919.1 )

#26497

IJSEM 1725 2012 ( DOI 10.1099/ijs.0.029959-0 , PubMed 21930680 )

* These data were automatically processed and therefore are not curated

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