Strain identifier
BacDive ID: 23310
Type strain: 
Species: Streptomyces shaanxiensis
Strain history: Y. B. Lin CCNWHQ 0031.
NCBI tax ID(s): 653357 (species)
version 8.1 (current version)
General
@ref: 19164
BacDive-ID: 23310
DSM-Number: 42094
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive
description: Streptomyces shaanxiensis DSM 42094 is an aerobe, spore-forming, mesophilic bacterium that was isolated from sewage irrigation area.
NCBI tax id
- NCBI tax id: 653357
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19164 | <- JCM; JCM 16925 <- Y. B. Lin; CCNWHQ 0031 |
| 67770 | Y. B. Lin CCNWHQ 0031. |
doi: 10.13145/bacdive23310.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces shaanxiensis
- full scientific name: Streptomyces shaanxiensis Lin et al. 2012
@ref: 19164
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces shaanxiensis
full scientific name: Streptomyces shaanxiensis Lin et al. 2012
type strain: yes
Morphology
cell morphology
- @ref: 30146
- gram stain: positive
pigmentation
- @ref: 30146
- production: yes
multimedia
- @ref: 19164
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42094.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 19164
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19164 | positive | growth | 28 | mesophilic |
| 30146 | positive | growth | 20-37 | |
| 30146 | positive | optimum | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30146 | positive | growth | 05-11 | alkaliphile |
| 30146 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 30146
- oxygen tolerance: aerobe
spore formation
- @ref: 30146
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30146 | NaCl | positive | growth | 0-3 % |
| 30146 | NaCl | positive | optimum | 1 % |
observation
- @ref: 67770
- observation: quinones: MK-9(H8)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30146 | 28757 | fructose | + | carbon source |
| 30146 | 28260 | galactose | + | carbon source |
| 30146 | 17754 | glycerol | + | carbon source |
| 30146 | 17716 | lactose | + | carbon source |
| 30146 | 29864 | mannitol | + | carbon source |
| 30146 | 17992 | sucrose | + | carbon source |
| 30146 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 30146
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 19164 | sewage irrigation area | Shaanxii province | China | CHN | Asia |
| 67770 | Sewage irrigation area from Shaanxi Province | China | CHN | Asia |
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Wastewater
taxonmaps
- @ref: 69479
- File name: preview.99_826.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_118;99_826&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: FJ465151
- Sequence Identity:
- Total samples: 872
- soil counts: 433
- aquatic counts: 18
- animal counts: 71
- plant counts: 350
Safety information
risk assessment
- @ref: 19164
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19164
- description: Streptomyces shaanxiensis strain CCNWHQ 0031 16S ribosomal RNA gene, partial sequence
- accession: FJ465151
- length: 1445
- database: ena
- NCBI tax ID: 653357
GC content
| @ref | GC-content | method |
|---|---|---|
| 19164 | 70.7 | thermal denaturation, midpoint method (Tm) |
| 30146 | 70.7 |
External links
@ref: 19164
culture collection no.: DSM 42094, ACCC 41873, JCM 16925, CCNWHQ 0031, CCNWTJ 0031
straininfo link
- @ref: 87528
- straininfo: 407919
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21930680 | Streptomyces shaanxiensis sp. nov., a blue pigment-producing streptomycete from sewage irrigation soil. | Lin YB, Wang XY, Fang H, Ma YN, Tang J, Tang M, Wei GH | Int J Syst Evol Microbiol | 10.1099/ijs.0.029959-0 | 2011 | Bacterial Typing Techniques, DNA, Bacterial/genetics, Molecular Sequence Data, *Phylogeny, *Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification | Genetics |
| Phylogeny | 29944112 | Streptomyces populi sp. nov., a novel endophytic actinobacterium isolated from stem of Populus adenopoda Maxim. | Wang Z, Jiang B, Li X, Gan L, Long X, Zhang Y, Tian Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002877 | 2018 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Stems/*microbiology, Populus/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/growth & development/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 31219415 | Streptomyces cyaneochromogenes sp. nov., a blue pigment-producing actinomycete from manganese-contaminated soil. | Tang X, Zhao J, Li K, Chen Z, Sun Y, Gao J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003406 | 2019 | Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Manganese, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, *Soil Pollutants, Streptomyces/classification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 19164 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42094) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42094 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30146 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26497 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 87528 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407919.1 | StrainInfo: A central database for resolving microbial strain identifiers |